Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6H78_RS03940 Genome accession   NZ_CP066059
Coordinates   835720..836649 (-) Length   309 a.a.
NCBI ID   WP_001291311.1    Uniprot ID   A0A291D7C0
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 830720..841649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS03920 (I6H78_03920) - 830960..831523 (-) 564 WP_198460145.1 ECF transporter S component -
  I6H78_RS03925 (I6H78_03925) - 831935..832438 (-) 504 WP_033629317.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  I6H78_RS03930 (I6H78_03930) trkA 832839..834188 (+) 1350 WP_198460146.1 Trk system potassium transporter TrkA -
  I6H78_RS03935 (I6H78_03935) - 834192..835631 (+) 1440 WP_125422924.1 TrkH family potassium uptake protein -
  I6H78_RS03940 (I6H78_03940) amiF 835720..836649 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  I6H78_RS03945 (I6H78_03945) amiE 836660..837727 (-) 1068 WP_061852929.1 ABC transporter ATP-binding protein Regulator
  I6H78_RS03950 (I6H78_03950) amiD 837736..838662 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  I6H78_RS03955 (I6H78_03955) amiC 838662..840158 (-) 1497 WP_000759891.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35053.25 Da        Isoelectric Point: 7.0424

>NTDB_id=516946 I6H78_RS03940 WP_001291311.1 835720..836649(-) (amiF) [Streptococcus oralis strain FDAARGOS_1021]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=516946 I6H78_RS03940 WP_001291311.1 835720..836649(-) (amiF) [Streptococcus oralis strain FDAARGOS_1021]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACCTTCTCACTTGTAGGTGAGTCTGGTAGTGGGAAAACAACCATTGGTCGTG
CCATTATTGGTCTAAATAATACTAGTAAAGGTGAGATCATCTTTGATGGTCATAAGATCAATGGGAAAAAATCTCATAAG
GAATCATCGGACTTGATCCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCTAGCTTGAATGAGCGTGCAACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCATTTGTTTAAAGATGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATCTCTGCCTTGGACGTATCAGTGCGTGC
GCAGGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTTATCGCGCATGACTTGTCGGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAT
AATCCTGTCCACCCATACACTCAAGCACTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
AAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCGGAAGTTGCTCGATACAAAGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291D7C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838