Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I6H78_RS03955 Genome accession   NZ_CP066059
Coordinates   838662..840158 (-) Length   498 a.a.
NCBI ID   WP_000759891.1    Uniprot ID   I0Q2A0
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 833662..845158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS03935 (I6H78_03935) - 834192..835631 (+) 1440 WP_125422924.1 TrkH family potassium uptake protein -
  I6H78_RS03940 (I6H78_03940) amiF 835720..836649 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  I6H78_RS03945 (I6H78_03945) amiE 836660..837727 (-) 1068 WP_061852929.1 ABC transporter ATP-binding protein Regulator
  I6H78_RS03950 (I6H78_03950) amiD 837736..838662 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  I6H78_RS03955 (I6H78_03955) amiC 838662..840158 (-) 1497 WP_000759891.1 ABC transporter permease Regulator
  I6H78_RS03960 (I6H78_03960) amiA 840225..842204 (-) 1980 WP_198460147.1 peptide ABC transporter substrate-binding protein Regulator
  I6H78_RS03970 (I6H78_03970) - 842721..844052 (-) 1332 WP_198460148.1 hemolysin family protein -
  I6H78_RS03975 (I6H78_03975) endA 844188..845012 (-) 825 WP_198460149.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55727.14 Da        Isoelectric Point: 9.2425

>NTDB_id=516949 I6H78_RS03955 WP_000759891.1 838662..840158(-) (amiC) [Streptococcus oralis strain FDAARGOS_1021]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQERAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYANLIDIDHPNKIQDPENPNLQRYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=516949 I6H78_RS03955 WP_000759891.1 838662..840158(-) (amiC) [Streptococcus oralis strain FDAARGOS_1021]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACTTTGACCTACACAATTAT
CTATACGATGGTTCCTCGAAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAACGGATGGGCTATATCGAGTACTACGATACCAAGGAGTTGCAAGAAAGAGCGAGC
ACAATGGACTCATCTGTAACAGTGGATGCCAATGATACCAATAAGGCAATCTACGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACGCTCGGTGTGTTCTCAGAAAGTGGTCAATTCTATGCAACGCGTGAAATTCCGATTTTTGAACGTGTTTTCA
AATTCTATGCGAACTTGATTGATATTGATCATCCAAACAAGATTCAAGACCCTGAAAATCCAAACTTGCAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAATACCTTTTGTATTTCAACAA
TCAATTCCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGAGATTCTTACCCAACTTATGCAAATACACCAGTGC
TTCAGGTTATCACACAAGGTCAGGGACAAACTAAGACATCAGAAGTTCAATTCCCTACAGGTAAAAAGACTTCATCTGTA
GATATTTACTCTCGTACTTACAAATCTCCAAGTCAAGCAGATGCGCGTGAAGTAGCCAACTATGGTAAGGACGATCCATA
TACAGCTACAGAAAGCAATTATCAATATCCATCAATGATTGCAAGCTCAGCGGTTGCTGGTTTGATTGGTTTGATTATTT
CGTATGCGATTGCTATTCCTCTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
CTAACCTTCTTGCTTGCTCTTCCAACGATTGCCTTGGTTTACATCGTGCGTTTGATTGGCTCATCAATTGGTCTGCCTGA
CTCATTCCCTATCTTGGGTGCAGGAGATTGGCGTTCTTATGTCTTGCCAGCAGTTATTCTAGGTTTGTTGGGTGCGCCAA
GTACAGCTATCTGGATTCGTCGTTACATGATCGACTTGCAATCCCAGGACTTTGTTCGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTCAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACGGTCTTTGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTCGTCTTTATCTTTACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0Q2A0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.104

100

0.761
  amiC Streptococcus thermophilus LMD-9

75.904

100

0.759