Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KZO18_RS13375 Genome accession   NZ_CP080085
Coordinates   2713999..2714763 (+) Length   254 a.a.
NCBI ID   WP_001136229.1    Uniprot ID   B7L5T2
Organism   Escherichia coli strain 19SZHZ869Rt     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2708999..2719763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO18_RS13355 (KZO18_13330) acpT 2709953..2710540 (+) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -
  KZO18_RS13360 (KZO18_13335) nikA 2710651..2712225 (+) 1575 WP_000953348.1 nickel ABC transporter substrate-binding protein -
  KZO18_RS13365 (KZO18_13340) nikB 2712225..2713169 (+) 945 WP_000947062.1 nickel ABC transporter permease subunit NikB -
  KZO18_RS13370 (KZO18_13345) nikC 2713166..2713999 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  KZO18_RS13375 (KZO18_13350) amiE 2713999..2714763 (+) 765 WP_001136229.1 nickel import ATP-binding protein NikD Regulator
  KZO18_RS13380 (KZO18_13355) nikE 2714760..2715566 (+) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  KZO18_RS13385 (KZO18_13360) nikR 2715572..2715973 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26820.38 Da        Isoelectric Point: 6.3761

>NTDB_id=516951 KZO18_RS13375 WP_001136229.1 2713999..2714763(+) (amiE) [Escherichia coli strain 19SZHZ869Rt]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=516951 KZO18_RS13375 WP_001136229.1 2713999..2714763(+) (amiE) [Escherichia coli strain 19SZHZ869Rt]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
AGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L5T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398