Detailed information NTG0516936

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KZO18_RS09620
• Genome accession: NZ_CP080085
• Coordinates: 1954916..1955908 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 19SZHZ869Rt
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1949916..1960908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZO18_RS09600 (KZO18_09585)	otnK	1950691..1951953 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
KZO18_RS09605 (KZO18_09590)	ygbL	1951950..1952588 (+)	639	WP_001278994.1	aldolase	-
KZO18_RS09610 (KZO18_09595)	ygbM	1952593..1953369 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KZO18_RS09615 (KZO18_09600)	ygbN	1953458..1954822 (+)	1365	WP_000104441.1	GntP family transporter	-
KZO18_RS09620 (KZO18_09605)	rpoS	1954916..1955908 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KZO18_RS09625 (KZO18_09610)	nlpD	1955971..1957065 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KZO18_RS09630 (KZO18_09615)	pcm	1957250..1957876 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KZO18_RS09635 (KZO18_09620)	surE	1957870..1958631 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KZO18_RS09640 (KZO18_09625)	truD	1958612..1959661 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
KZO18_RS09645 (KZO18_09630)	ispF	1959658..1960137 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KZO18_RS09650 (KZO18_09635)	ispD	1960137..1960847 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=516936 KZO18_RS09620 WP_000081550.1 1954916..1955908(-) (rpoS) [Escherichia coli strain 19SZHZ869Rt]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=516936 KZO18_RS09620 WP_000081550.1 1954916..1955908(-) (rpoS) [Escherichia coli strain 19SZHZ869Rt]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715