Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   I6H76_RS08600 Genome accession   NZ_CP065994
Coordinates   1671772..1672482 (+) Length   236 a.a.
NCBI ID   WP_006532762.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1666772..1677482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS08570 (I6H76_08570) - 1667331..1667633 (+) 303 WP_006532768.1 hypothetical protein -
  I6H76_RS08575 (I6H76_08575) - 1667846..1668454 (+) 609 WP_006532767.1 TVP38/TMEM64 family protein -
  I6H76_RS08580 (I6H76_08580) - 1668492..1669139 (-) 648 WP_006532766.1 amino acid ABC transporter permease -
  I6H76_RS08585 (I6H76_08585) - 1669152..1669856 (-) 705 WP_006532765.1 amino acid ABC transporter permease -
  I6H76_RS08590 (I6H76_08590) - 1669873..1670685 (-) 813 WP_043878445.1 transporter substrate-binding domain-containing protein -
  I6H76_RS08595 (I6H76_08595) - 1670696..1671460 (-) 765 WP_006532763.1 amino acid ABC transporter ATP-binding protein -
  I6H76_RS08600 (I6H76_08600) vicR 1671772..1672482 (+) 711 WP_006532762.1 response regulator YycF Regulator
  I6H76_RS08605 (I6H76_08605) vicK 1672475..1673827 (+) 1353 WP_006532761.1 cell wall metabolism sensor histidine kinase VicK Regulator
  I6H76_RS08610 (I6H76_08610) vicX 1673828..1674637 (+) 810 WP_006532760.1 MBL fold metallo-hydrolase Regulator
  I6H76_RS08615 (I6H76_08615) rnc 1674859..1675545 (+) 687 WP_006532759.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27151.93 Da        Isoelectric Point: 4.7040

>NTDB_id=516153 I6H76_RS08600 WP_006532762.1 1671772..1672482(+) (vicR) [Streptococcus infantarius strain FDAARGOS_1019]
MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIE
LTHREFELLHHLATHMGQVMTREYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=516153 I6H76_RS08600 WP_006532762.1 1671772..1672482(+) (vicR) [Streptococcus infantarius strain FDAARGOS_1019]
ATGAAAAAAATTCTTATTGTTGATGATGAAAAACCAATTTCAGATATTATTAAATTTAACTTAACTAAAGAAGGTTATGA
AACTGTTACGGCTTTTGATGGTCGTGAAGCAATTACTAAATTTGAAGAAGAAAATCCTGATTTGATTATCTTGGATTTGA
TGTTGCCAGAATTGGATGGACTTGAAGTTGCAAAAGAAGTTCGTAAAACGAGTCATATTCCTATTATTATGCTTTCTGCA
AAAGATAGTGAGTTCGATAAAGTTATCGGTCTTGAAATCGGTGCAGATGACTACGTCACAAAACCTTTCTCAAATCGTGA
ATTGTTAGCACGTGTCAAAGCACACCTTCGTCGTACTGAGAACATCGAATCAGCTGTCGCTGAGGAAAATGCTTCTTCAT
CAAATTCTGAAATTACCATCGGCGATTTGAAGATTTTGCCTGATGCCTTTGTTGCCCAAAAACGTGGCGAAGACATTGAA
TTAACACACCGTGAATTTGAATTACTTCATCACTTAGCTACTCACATGGGACAAGTGATGACGCGTGAATACCTTTTGGA
GACTGTTTGGGGTTATGATTACTTTGGTGATGTCCGCACGGTTGACGTTACCATCCGTCGTTTACGTGAAAAAATCGAAG
ACACTCCGAGCCGTCCAGAATATATTTTGACACGTCGCGGTGTTGGATACTACATGAAGTCTTATGAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.678

100

0.907
  micA Streptococcus pneumoniae Cp1015

78.205

99.153

0.775
  covR Streptococcus salivarius strain HSISS4

46.983

98.305

0.462
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.69

98.305

0.449
  scnR Streptococcus mutans UA159

36.441

100

0.364