Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I8T81_RS01680 Genome accession   NZ_CP065820
Coordinates   351348..353474 (+) Length   708 a.a.
NCBI ID   WP_151760756.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346348..358474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS01660 (I8T81_01660) pilM 348309..349367 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  I8T81_RS01665 (I8T81_01665) pilN 349367..350011 (+) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  I8T81_RS01670 (I8T81_01670) pilO 350008..350748 (+) 741 WP_198071985.1 type 4a pilus biogenesis protein PilO Machinery gene
  I8T81_RS01675 (I8T81_01675) pilP 350759..351286 (+) 528 WP_198071986.1 pilus assembly protein PilP Machinery gene
  I8T81_RS01680 (I8T81_01680) pilQ 351348..353474 (+) 2127 WP_151760756.1 type IV pilus secretin PilQ family protein Machinery gene
  I8T81_RS01685 (I8T81_01685) aroK 353486..354055 (+) 570 WP_004705195.1 shikimate kinase AroK -
  I8T81_RS01690 (I8T81_01690) aroB 354084..355166 (+) 1083 WP_198071987.1 3-dehydroquinate synthase -
  I8T81_RS01695 (I8T81_01695) - 355182..356056 (+) 875 Protein_325 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76612.07 Da        Isoelectric Point: 6.5725

>NTDB_id=514736 I8T81_RS01680 WP_151760756.1 351348..353474(+) (pilQ) [Acinetobacter seifertii strain S21]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDVRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTNKPIPAATVQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLARRLNVNDFATPVSSIDAYNEKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSTSASYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVTELIKAEDDEAKALAQTIKLAPIQTDYIRLSYAKATDVLKLIEDTRDGKGAVANRTANSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLRDPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLTTTISGAGSAATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTTNTQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=514736 I8T81_RS01680 WP_151760756.1 351348..353474(+) (pilQ) [Acinetobacter seifertii strain S21]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAAGCGCAACAAAGTTTAAAGCAGTCTAAAATT
GCTGTTGCAACGAATGAAGCAAGTTCCGTTGATGTGACTTCAGATGATGTACGTTCACGCTTAACTGTAAATCTAAAAGA
TGCTGGTGCTTTTACAACGCGCGTGGAAGGCAATACTTTTATTCTAAAAATTAATTCAGCTCAAACAACGAATAAGCCGA
TACCAGCAGCTACCGTACAACCACAAGGTGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAGGTTGTTATAAGAACATTAGGTACAAA
GATTCCGACACATTTAGCACGTCGTTTAAATGTAAATGATTTTGCAACGCCCGTATCAAGTATCGATGCTTATAATGAAA
AAGGTGCTGGTGTAATCACAATTCAGTCATCTGGTAGTTATGAATATATGGCTTATCAAGCTGAAAATAAGCTCACTATT
AGTTTGAAACGTCCACAAGATAAAAGTACATCAGCTTCGTATAAAGCACCAAGTTATTCTGGTAATAAGCTTTCATTAGA
CTTCCAAGACATTGAAGTGCGTCGTGTATTACAGTTGCTTGCCGATTTTACAGGCATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAACATCACGCTACGTTTGAAAGATGTACCTTGGGATCAAGCACTAGATATTATTTTAAAAACTAAAAATCTT
GATAAACGTCGTAATGGAAATGTAATTTGGATTGCTCCTGTTACTGAATTAATTAAAGCAGAAGATGATGAGGCAAAAGC
CTTAGCTCAAACGATTAAGTTAGCGCCAATCCAAACAGATTATATTCGTTTGAGTTATGCAAAAGCGACTGATGTGCTTA
AGTTGATTGAAGATACTCGTGATGGTAAAGGTGCAGTTGCAAATCGTACCGCAAACTCTGATTCTCTTGCGTTGGAGAGC
TTATTAAGTTCACGTGGTAGCGCTGTTGCTGATACCCGGACTAATACTTTGATTGTAAATGATACAGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAACTACTTGATGTGCAAGTTAAGCAGGTGATGGTTGAAGCGCGTATCGTCAGAGCGTCTA
CGTCATTTACTAAAGAACTTGGAGTTAAGTGGGGTATTCTTTCACAAGGTATTACTAATAATAAAAATTTATTGGTTGGT
GGTAGTGAAACAACTTTATGGAATTTACGTGACCCTAAAAAAGATGAAACTACTGGAGGCTATAAATATACCATCGAACG
TCCAGATAACTTAAACGTTGATTTGGGAGTCTCTAATCCGGCGGGAAGTATTGCCTTTGGTCTTATCAGTATGTCTGATT
TTATGTTAGATCTTGAACTCTCAGCTTTACAGGCTGATGGTTATGGTGAAGTCATTTCAACCCCTAAAGTCATGACTGCC
GATAAGCAAACTGCAAAAGTTGCCACGGGTCAACAAGTTCCTTATCTAACGACAACGATATCTGGTGCGGGTTCAGCAGC
CACAACATCATTTAAAGATGCTCTTTTAAGTCTTGATGTTACACCTAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TAGATATTTCTAAGGATTCTGTAGCGGGTGAAGCGCCAAATGGTGAGTTAATTCTGAATAAGAATAATATTAATACCAAT
GTGCTGGTTGATAACGGAGAAACCGTCATTTTAGGTGGTGTATTCGAGCAAACAACGACAAATACCCAAACTAAAGTTCC
ATTCTTTGGGGATATTCCTTTAGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTT
TCGTAACACCACGAATTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

AMIN domain (AMIN)

(39-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

87.517

100

0.891
  pilQ Acinetobacter baumannii strain A118

87.379

100

0.89
  comQ Acinetobacter baylyi ADP1

72.765

100

0.736
  pilQ Pseudomonas aeruginosa PAK

39.773

99.435

0.395