Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I8T81_RS01675 Genome accession   NZ_CP065820
Coordinates   350759..351286 (+) Length   175 a.a.
NCBI ID   WP_198071986.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345759..356286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS01660 (I8T81_01660) pilM 348309..349367 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  I8T81_RS01665 (I8T81_01665) pilN 349367..350011 (+) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  I8T81_RS01670 (I8T81_01670) pilO 350008..350748 (+) 741 WP_198071985.1 type 4a pilus biogenesis protein PilO Machinery gene
  I8T81_RS01675 (I8T81_01675) pilP 350759..351286 (+) 528 WP_198071986.1 pilus assembly protein PilP Machinery gene
  I8T81_RS01680 (I8T81_01680) pilQ 351348..353474 (+) 2127 WP_151760756.1 type IV pilus secretin PilQ family protein Machinery gene
  I8T81_RS01685 (I8T81_01685) aroK 353486..354055 (+) 570 WP_004705195.1 shikimate kinase AroK -
  I8T81_RS01690 (I8T81_01690) aroB 354084..355166 (+) 1083 WP_198071987.1 3-dehydroquinate synthase -
  I8T81_RS01695 (I8T81_01695) - 355182..356056 (+) 875 Protein_325 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19370.62 Da        Isoelectric Point: 9.4007

>NTDB_id=514735 I8T81_RS01675 WP_198071986.1 350759..351286(+) (pilP) [Acinetobacter seifertii strain S21]
MKIKQITLYILACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRMPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=514735 I8T81_RS01675 WP_198071986.1 350759..351286(+) (pilP) [Acinetobacter seifertii strain S21]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCTTGTGCTGCTCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATCGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGTCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTATGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGTATGCG
GAATAGTCGGGGTCAAATATTAGCTCTCATCCAGACGCCAGATCATCAAGTTGAACGCGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGTCCGACTCAGATTGATTTGGTCGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.286

100

0.943
  comL Acinetobacter baylyi ADP1

70.69

99.429

0.703