Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G23_RS09245 Genome accession   NZ_CP065735
Coordinates   1560322..1560774 (-) Length   150 a.a.
NCBI ID   WP_010905690.1    Uniprot ID   A0AAC9R1D2
Organism   Lactococcus lactis strain FDAARGOS_866     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1555322..1565774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G23_RS09185 (I6G23_09185) - 1555521..1556075 (-) 555 WP_010905358.1 DUF1642 domain-containing protein -
  I6G23_RS09190 (I6G23_09190) - 1556072..1556344 (-) 273 WP_010905357.1 hypothetical protein -
  I6G23_RS09195 (I6G23_09195) - 1556337..1556543 (-) 207 WP_010905356.1 DUF1125 domain-containing protein -
  I6G23_RS09200 (I6G23_09200) - 1556587..1556730 (+) 144 WP_153916742.1 hypothetical protein -
  I6G23_RS09205 (I6G23_09205) - 1556737..1557306 (-) 570 WP_010905697.1 DUF658 family protein -
  I6G23_RS09210 (I6G23_09210) - 1557296..1557475 (-) 180 WP_010905696.1 DUF1497 domain-containing protein -
  I6G23_RS09215 (I6G23_09215) - 1557497..1557757 (-) 261 WP_223203848.1 hypothetical protein -
  I6G23_RS09220 (I6G23_09220) - 1557875..1558114 (-) 240 WP_031297271.1 DUF1031 family protein -
  I6G23_RS09225 (I6G23_09225) - 1558107..1558301 (-) 195 WP_010905693.1 hypothetical protein -
  I6G23_RS09230 (I6G23_09230) - 1558304..1558693 (-) 390 WP_002819817.1 RusA family crossover junction endodeoxyribonuclease -
  I6G23_RS09235 (I6G23_09235) - 1558690..1559415 (-) 726 WP_015966759.1 hypothetical protein -
  I6G23_RS09240 (I6G23_09240) - 1559415..1560197 (-) 783 WP_015966758.1 phage replisome organizer protein -
  I6G23_RS09245 (I6G23_09245) ssb 1560322..1560774 (-) 453 WP_010905690.1 single-stranded DNA-binding protein Machinery gene
  I6G23_RS09250 (I6G23_09250) - 1560774..1561397 (-) 624 WP_010905689.1 DUF1071 domain-containing protein -
  I6G23_RS09255 (I6G23_09255) - 1561406..1561924 (-) 519 WP_010905688.1 host-nuclease inhibitor Gam family protein -
  I6G23_RS09260 (I6G23_09260) - 1562040..1562255 (-) 216 WP_015966756.1 DUF1408 domain-containing protein -
  I6G23_RS09265 (I6G23_09265) - 1562358..1562633 (+) 276 WP_023349243.1 hypothetical protein -
  I6G23_RS09270 (I6G23_09270) - 1562630..1562824 (-) 195 WP_010905685.1 hypothetical protein -
  I6G23_RS09275 (I6G23_09275) - 1562962..1563297 (-) 336 WP_003131910.1 DUF771 domain-containing protein -
  I6G23_RS09280 (I6G23_09280) - 1563310..1564053 (-) 744 WP_010905684.1 ORF6C domain-containing protein -
  I6G23_RS09285 (I6G23_09285) - 1564090..1564308 (-) 219 WP_010905683.1 DUF739 family protein -
  I6G23_RS09290 (I6G23_09290) - 1564477..1565019 (+) 543 WP_010905682.1 helix-turn-helix domain-containing protein -
  I6G23_RS09295 (I6G23_09295) - 1565016..1565453 (+) 438 WP_010905681.1 ImmA/IrrE family metallo-endopeptidase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16643.67 Da        Isoelectric Point: 8.9728

>NTDB_id=513688 I6G23_RS09245 WP_010905690.1 1560322..1560774(-) (ssb) [Lactococcus lactis strain FDAARGOS_866]
MINNVVLVGRLTRDPELRHTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQQAENLAKFAKKGALIGITGRIQTR
NYENQQGQKVYVTEVVADTFQMLESNKTQGQQTSKPQAQNKKPQAPDPFKAPAADPFAGGTEISDDDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=513688 I6G23_RS09245 WP_010905690.1 1560322..1560774(-) (ssb) [Lactococcus lactis strain FDAARGOS_866]
ATGATTAATAATGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGACATACACCACAGAACCAAGCAGTAGG
TACATTTGGATTAGCTGTAAATCGCCAGTTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGACAACAAGCCGAAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATTGGAATAACTGGACGGATTCAAACAAGG
AACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGAAAGCAATAA
AACACAAGGTCAGCAAACAAGTAAACCGCAAGCTCAAAATAAAAAGCCACAAGCACCAGACCCTTTTAAAGCTCCTGCTG
CTGATCCATTTGCTGGTGGTACTGAAATTTCAGATGATGACCTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.667
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.907

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

69.333

0.407
  ssb Neisseria meningitidis MC58

34.302

100

0.393
  ssb Neisseria gonorrhoeae MS11

33.721

100

0.387
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.381

70

0.367
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.429

70

0.36