Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   N564_RS03140 Genome accession   NC_022352
Coordinates   597775..598158 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni 00-2426     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592775..603158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N564_RS03120 (N564_00618) - 592854..594788 (-) 1935 WP_002858479.1 ribonuclease R family protein -
  N564_RS03125 (N564_00619) ilvC 594907..595929 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  N564_RS03130 (N564_00620) - 595933..597015 (+) 1083 WP_002858589.1 divergent polysaccharide deacetylase family protein -
  N564_RS03135 (N564_00621) dprA 597005..597778 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  N564_RS03140 (N564_00622) dprB 597775..598158 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  N564_RS03145 (N564_00623) - 598187..599026 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  N564_RS03150 (N564_00624) msrA 599202..599699 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  N564_RS03155 (N564_00625) ppa 599740..600258 (-) 519 WP_002858521.1 inorganic diphosphatase -
  N564_RS03160 (N564_00626) adk 600268..600846 (-) 579 WP_002858481.1 adenylate kinase -
  N564_RS03165 (N564_00627) aspS 600843..602594 (-) 1752 WP_002858612.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=51359 N564_RS03140 WP_002858579.1 597775..598158(+) (dprB) [Campylobacter jejuni subsp. jejuni 00-2426]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=51359 N564_RS03140 WP_002858579.1 597775..598158(+) (dprB) [Campylobacter jejuni subsp. jejuni 00-2426]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment