Detailed information NTG0051353

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: Y1U_RS08855
• Genome accession: NC_017927
• Coordinates: 1696952..1697380 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus MN-ZLW-002
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1691952..1702380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Y1U_RS08815 (Y1U_C1738)	-	1692090..1692533 (-)	444	WP_041829335.1	hypothetical protein	-
Y1U_RS11965 (Y1U_C1739)	-	1692607..1693026 (-)	420	WP_014727721.1	CPBP family intramembrane glutamic endopeptidase	-
Y1U_RS08825 (Y1U_C1741)	-	1693275..1693472 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
Y1U_RS08830 (Y1U_C1742)	-	1693721..1694914 (-)	1194	WP_014608740.1	acetate kinase	-
Y1U_RS08835 (Y1U_C1743)	comYH	1694970..1695926 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
Y1U_RS08840 (Y1U_C1744)	comGG	1695971..1696288 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
Y1U_RS08845 (Y1U_C1745)	comYF	1696266..1696703 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
Y1U_RS08850	comGE	1696687..1696980 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
Y1U_RS08855 (Y1U_C1747)	comYD	1696952..1697380 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
Y1U_RS08860 (Y1U_C1748)	comYC	1697340..1697666 (-)	327	WP_014727724.1	competence type IV pilus major pilin ComGC	Machinery gene
Y1U_RS08865 (Y1U_C1749)	comYB	1697663..1698763 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
Y1U_RS08870 (Y1U_C1750)	comGA/cglA/cilD	1698645..1699586 (-)	942	WP_014727726.1	competence type IV pilus ATPase ComGA	Machinery gene
Y1U_RS08875 (Y1U_C1751)	-	1699667..1700029 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=51353 Y1U_RS08855 WP_011226626.1 1696952..1697380(-) (comYD) [Streptococcus thermophilus MN-ZLW-002]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=51353 Y1U_RS08855 WP_011226626.1 1696952..1697380(-) (comYD) [Streptococcus thermophilus MN-ZLW-002]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTCAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38