Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   Y1U_RS08835 Genome accession   NC_017927
Coordinates   1694970..1695926 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus MN-ZLW-002     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689970..1700926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y1U_RS08805 (Y1U_C1736) proC 1690531..1691301 (+) 771 WP_014727718.1 pyrroline-5-carboxylate reductase -
  Y1U_RS08810 (Y1U_C1737) - 1691331..1691993 (-) 663 WP_014727719.1 CPBP family intramembrane glutamic endopeptidase -
  Y1U_RS08815 (Y1U_C1738) - 1692090..1692533 (-) 444 WP_041829335.1 hypothetical protein -
  Y1U_RS11965 (Y1U_C1739) - 1692607..1693026 (-) 420 WP_014727721.1 CPBP family intramembrane glutamic endopeptidase -
  Y1U_RS08825 (Y1U_C1741) - 1693275..1693472 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  Y1U_RS08830 (Y1U_C1742) - 1693721..1694914 (-) 1194 WP_014608740.1 acetate kinase -
  Y1U_RS08835 (Y1U_C1743) comYH 1694970..1695926 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  Y1U_RS08840 (Y1U_C1744) comGG 1695971..1696288 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  Y1U_RS08845 (Y1U_C1745) comYF 1696266..1696703 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  Y1U_RS08850 comGE 1696687..1696980 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  Y1U_RS08855 (Y1U_C1747) comYD 1696952..1697380 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  Y1U_RS08860 (Y1U_C1748) comYC 1697340..1697666 (-) 327 WP_014727724.1 competence type IV pilus major pilin ComGC Machinery gene
  Y1U_RS08865 (Y1U_C1749) comYB 1697663..1698763 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  Y1U_RS08870 (Y1U_C1750) comGA/cglA/cilD 1698645..1699586 (-) 942 WP_014727726.1 competence type IV pilus ATPase ComGA Machinery gene
  Y1U_RS08875 (Y1U_C1751) - 1699667..1700029 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=51351 Y1U_RS08835 WP_011226622.1 1694970..1695926(-) (comYH) [Streptococcus thermophilus MN-ZLW-002]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=51351 Y1U_RS08835 WP_011226622.1 1694970..1695926(-) (comYH) [Streptococcus thermophilus MN-ZLW-002]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment