Detailed information NTG0051356

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: N564_RS02515
• Genome accession: NC_022352
• Coordinates: 475015..477588 (-)
• Length: 857 a.a.
• NCBI ID: WP_002858618.1
• Uniprot ID: Q9PI02
• Organism: Campylobacter jejuni subsp. jejuni 00-2426
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 470015..482588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N564_RS02505 (N564_00494)	maf	472508..473059 (+)	552	WP_002855005.1	septum formation inhibitor Maf	-
N564_RS02510 (N564_00495)	pbpA	473056..474987 (+)	1932	WP_002858576.1	penicillin-binding protein 1A	-
N564_RS02515 (N564_00496)	clpC	475015..477588 (-)	2574	WP_002858618.1	AAA family ATPase	Regulator
N564_RS02520 (N564_00497)	-	477700..477990 (-)	291	WP_002855280.1	metal-sensing transcriptional repressor	-
N564_RS02525 (N564_00498)	-	478108..479442 (+)	1335	WP_021034195.1	S41 family peptidase	-
N564_RS02530 (N564_00499)	purC	479444..480154 (+)	711	WP_002858572.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
N564_RS02535 (N564_00500)	purS	480163..480408 (+)	246	WP_002858611.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
N564_RS02540 (N564_00501)	purQ	480410..481081 (+)	672	WP_002858528.1	phosphoribosylformylglycinamidine synthase I	-
N564_RS02545 (N564_00502)	-	481053..482249 (+)	1197	WP_021034196.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95543.69 Da
• Isoelectric Point: 5.2764

>NTDB_id=51356 N564_RS02515 WP_002858618.1 475015..477588(-) (clpC) [Campylobacter jejuni subsp. jejuni 00-2426]
MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDSTSILNQILNKLNISKEALELEIKSRISKLATSSNVN
RENIRFSNELINSLENAKGLMSANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQNALNSQFENEKSVFDGISAKKKEID
LLKNEASLAKARGEFQKAAELEYGKIPSLEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASNAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKKA

Nucleotide

• Length: 2574 bp

>NTDB_id=51356 N564_RS02515 WP_002858618.1 475015..477588(-) (clpC) [Campylobacter jejuni subsp. jejuni 00-2426]
ATGGCAAATATACAAGATTTTTTAACTGATAATATGCTTTCAAACCTTGAAAGTGCAGCATCTTTAGCTATACATTCTAA
AAATAATGAAGTTGTACCTTTACATCTTTTATGGGCTTTAAGCGTAGATAGTACAAGTATTTTAAATCAAATTTTAAATA
AATTAAATATTTCTAAAGAAGCCTTAGAGCTTGAAATTAAAAGCAGAATTTCAAAACTTGCAACGAGTTCAAATGTAAAC
CGTGAAAATATACGCTTTTCCAATGAACTTATAAATTCATTAGAAAATGCTAAAGGATTAATGAGTGCTAATGGAGATAG
TTATTTAAGTGTGGATACTTGGCTTATAAGTGAAAGTCAAAAAAGTCCTATTAAAGAAATTTTGGCGCAATTTTTAGATT
TAAGAGAATTTCAAAAAGAGCTTGAAAGTCTAAGAGCGGGACGAAAAATGGATAGCAAAACAAGCGATGAAACTTTAGAT
AGCTTAAATAAATTTGGTATAGATTTAACCTTAAAAGCAAGCGAGGGTAAACTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGTTTGATGCAAATTTTAATACGTAAAACCAAAAATAACCCTATACTTTTAGGTGAACCAGGCGTAGGAAAAA
CAGCTATAGTAGAAGCTTTAGCACAAAGAATTATTAAAAAAGATGTTCCAAAATCTTTGCAAAATAAAAAAGTCATCGCT
CTTGATATGAGTGCTTTAATTGCAGGTGCAAAATACAGAGGAGAATTTGAAGATAGATTAAAAGCTGTGGTTAATGAAGT
GATAAAAAGTGAAAATATCATTCTTTTTATCGATGAAATTCACACTATAGTAGGAGCTGGAGCGAGTGAAGGCAGCATGG
ATGCGGCAAATATTTTAAAACCTGCTCTTGCAAGAGGTGAACTCCATACCATAGGCGCAACTACTTTAAAAGAATATCGT
AAATATTTTGAAAAAGATGCAGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGTGAGCCAAGTGTTAATGAGGCTTT
GGCTATGTTAAGGGGTATAAAAGAAAAGCTTGAAATTCATCATAATGTAACCATAAATGATAGTGCTTTAGTAGCCGCAG
CTAAACTTTCAAAGCGTTATATAGCAGATCGTTTTTTACCTGATAAGGCCATTGATTTAATCGATGAAGCTGCAGCTGAA
CTGAAAATGCAAATTGAAAGCGAACCAAGTTCTTTAAGAAAAGTACGCAAAGATATAGAAACTTTAGAAGTTGAAAATGA
AGCTTTAAAAATGGAAAATGATGAAAAAAATCAAAAAAGACTCGATGAAATCGCAAAAGAACTAGCTAATTTAAAAGAAA
AACAAAATGCCCTAAATTCACAGTTTGAAAATGAAAAAAGTGTTTTTGATGGCATAAGTGCTAAGAAAAAAGAAATTGAT
CTGCTTAAAAATGAAGCTTCTTTGGCTAAAGCTAGAGGTGAATTTCAAAAAGCAGCCGAGCTAGAGTATGGAAAAATTCC
AAGTCTTGAAAAAGAAGTAGAAATTTTAGAAGATAAATGGAAAAAAATGAGTGAAAATGGAGTTTTACTTAAAAATCAAG
TAGATGAGGATTTGGTTGCTGGAATTTTAAGCAAATGGACGGGTATTAGCGTGCAAAAAATGTTAACTTCTGAAAAACAA
AAATTCTTAGAAGTGGAAAAACATTTAAAAGAAAGTGTCATAGGACAAGATAAGGCCTTAAGTGCTTTAGCTAGAGCCAT
TAAACGTAACAAAGCAGGGCTTAATGCGGACAATAAACCTATAGGAAGCTTTTTATTTTTAGGGCCAACAGGGGTAGGAA
AAACACAATCGGCTAAAGCTTTGGCAAAATTTTTATTTGATGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGTGTTTCAAGACTCTTAGGTGCGCCTCCAGGATATATAGGACATGAAGAAGGTGGAGAGCTTACTGA
AGCCGTACGAAGAAAACCTTATAGCGTGCTTTTGTTTGATGAAGTTGAAAAAGCACATAAAGATGTATTTAATGTGCTTT
TAGGGATTTTAGATGATGGTAGAGCAACCGATAGCAAAGGTGTAACAGTGGATTTTAAAAATACCATTATCATTCTAACT
TCTAATATCGCCTCAAACGCTATTATGAATTTAAGCGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAGTTTTTAAACCGTTTAGATGATATTATCACCTTTAATCCACTTGGAAAAGATGAAGCTTATGAAATAG
TCAAGCTTTTATTTAAAGATTTACAAATGAGCTTAGAAAACAAGGGAATAAAAGCAAGTTTAAGCGAAAATGCAGCCCTT
TTAATCGCTAAAGATGGTTTTGACCCTGATTTTGGTGCTAGACCTTTAAGAAGAGCTATTTATGATCTTATAGAAGATAA
ATTAAGCGATATGATACTTGCTGATGAACTTCATGAAAATGATAGCATTATCATTGATGCAAAAGATGATGAAATAATCA
TCAAAAAAGCTTAA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-844)

• AAA lid domain (AAA_lid_9) (342-444)

3D structure

• AlphaFold DB: Q9PI02

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.291	100	0.433
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.217	100	0.419