Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I6G33_RS12535 Genome accession   NZ_CP065721
Coordinates   2615429..2617504 (-) Length   691 a.a.
NCBI ID   WP_102828998.1    Uniprot ID   -
Organism   Stutzerimonas degradans strain FDAARGOS_876     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2610429..2622504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G33_RS12520 (I6G33_12520) - 2612189..2613745 (-) 1557 WP_102828995.1 AAA family ATPase -
  I6G33_RS12525 (I6G33_12525) aroB 2613755..2614858 (-) 1104 WP_102828996.1 3-dehydroquinate synthase -
  I6G33_RS12530 (I6G33_12530) aroK 2614879..2615424 (-) 546 WP_102828997.1 shikimate kinase AroK -
  I6G33_RS12535 (I6G33_12535) pilQ 2615429..2617504 (-) 2076 WP_102828998.1 type IV pilus secretin PilQ Machinery gene
  I6G33_RS12540 (I6G33_12540) pilP 2617560..2618087 (-) 528 WP_102828999.1 type 4a pilus biogenesis lipoprotein PilP -
  I6G33_RS12545 (I6G33_12545) pilO 2618084..2618707 (-) 624 WP_102829000.1 type 4a pilus biogenesis protein PilO -
  I6G33_RS12550 (I6G33_12550) pilN 2618704..2619276 (-) 573 WP_043297920.1 type 4a pilus biogenesis protein PilN -
  I6G33_RS12555 (I6G33_12555) pilM 2619276..2620340 (-) 1065 WP_102829001.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74570.25 Da        Isoelectric Point: 4.6144

>NTDB_id=513498 I6G33_RS12535 WP_102828998.1 2615429..2617504(-) (pilQ) [Stutzerimonas degradans strain FDAARGOS_876]
MNSTVSRLGVALLAFLAAPALLAANLNALDVAALPGDRVELKLAFDEPVNKPHGYTLEQPARIALDLPGVSNKLGVKNRE
LGVGNARSVTVVEAQGRTRLIVNLTTLVPYSTRIEGSNLFVVLGDSSAPVAVSNSTVAAPVATPAPSKPLLTSKAINNID
FRRGEDGAGNVIITLSDPSISSNIEEQSGKIRVSFAKTQLPESLRVRLDVQDFATPVKFVDATAQGGGAAIAIEPTGRYD
YLAYQTDDKLTISIKPLTEDEAQKRKAERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPW
DQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIAKLFQSVTNTEGQVD
ERGSIAVDDRTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGTQIFANGRGAVYGSDDF
GDEGGDAGEDSNGNYPFVDLGVTNRTAGIGIGYVTDNLILDLELSAMEKSGNGEIVSQPKVVTSDKETAKILKGSEIPYQ
EASSSGATSTSFKEAVLSLEVTPQITPDNRIIMEVKVTKDAPDYANALNDVPPINKNEVNAKVLVNDGETIVIGGVFSNT
QSRSVDKVPLLGDLPFLGRLFRRDSVTEEKSELLVFLTPRIVNNNAIAVSR

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=513498 I6G33_RS12535 WP_102828998.1 2615429..2617504(-) (pilQ) [Stutzerimonas degradans strain FDAARGOS_876]
ATGAATAGCACCGTCTCGCGTCTTGGTGTCGCATTGTTGGCGTTCCTGGCCGCCCCGGCTCTGCTGGCTGCCAACCTCAA
CGCCTTGGATGTTGCGGCGCTTCCCGGTGATCGTGTCGAGCTCAAGCTGGCGTTCGACGAGCCAGTGAATAAGCCGCATG
GCTATACGCTGGAGCAGCCGGCGCGCATTGCCCTGGATTTGCCCGGCGTGTCCAACAAGCTGGGTGTGAAGAATCGTGAG
TTGGGGGTAGGTAATGCTCGCAGCGTCACGGTTGTCGAGGCGCAAGGACGTACCCGTCTGATCGTCAATCTGACCACCCT
GGTGCCGTACTCGACGCGCATTGAGGGTAGCAACCTGTTCGTTGTGCTCGGCGACTCCTCGGCACCGGTTGCCGTATCCA
ATTCCACCGTCGCCGCCCCTGTAGCTACTCCGGCGCCTTCTAAGCCGCTGCTAACGAGCAAGGCGATTAACAACATTGAT
TTTCGGCGCGGTGAGGATGGCGCTGGCAATGTGATCATCACGCTTTCCGACCCTTCGATCAGTTCGAATATCGAAGAGCA
GAGCGGGAAAATCCGCGTTTCGTTTGCCAAGACTCAGTTGCCTGAGTCTCTGCGGGTTCGTCTGGATGTGCAGGATTTCG
CTACTCCAGTGAAGTTTGTCGATGCCACCGCACAGGGTGGTGGTGCAGCTATCGCCATTGAGCCTACAGGTCGCTACGAC
TATCTGGCCTATCAGACCGACGACAAGCTGACGATCAGCATCAAACCGCTGACCGAAGATGAGGCGCAGAAACGTAAGGC
GGAGCGATTTGCTTATTCGGGAGAGAAGTTGTCCCTTAACTTCCAGGACATCGATGTTCGCTCCGTACTGCAGTTGATTG
CAGACTTCACCGATCTCAATCTGGTCGCCAGCGATACGGTGCAGGGAAATATCACCCTGCGCCTGCAGAATGTGCCGTGG
GACCAGGCTCTTGATCTTGTCCTCAAGACCAAAGGGTTGGATAAGCGTCAGGTTGGTAATGTGCTGTTGGTCGCGCCTGC
TGACGAGATTGCGGCGCGCGAACGCCAGGAACTCGAATCGCAGCGGCAGATCGCCGAACTCGCTCCGCTGCGTCGGGAAG
TGGTACAGGTCAACTACGCCAAGGCGGCCGATATCGCCAAGCTCTTCCAGTCAGTGACCAACACCGAGGGTCAGGTGGAC
GAGCGTGGCTCAATTGCCGTTGATGATCGAACCAACAATATCATTGCTTATCAGACGCAGGATCGGCTGGACGAATTGCG
GCGTATCGTTGCGCAGTTGGACATTCCGGTTCGTCAAGTGATGATCGAGGCGCGAATTGTTGAAGCTAACGTGGATTACG
ACAAGAGTCTGGGGGTCCGCTGGGGTGGTACCCAGATATTCGCTAACGGCCGCGGCGCCGTATACGGTAGCGACGACTTC
GGTGATGAGGGTGGCGACGCTGGCGAAGATAGTAACGGCAATTACCCATTCGTCGATTTGGGGGTTACTAACCGTACCGC
AGGCATTGGTATCGGCTATGTGACCGACAATCTGATCCTTGATCTCGAGCTTTCGGCCATGGAAAAGTCGGGTAACGGTG
AAATCGTTTCCCAGCCCAAGGTAGTGACCTCCGACAAAGAGACGGCGAAGATTCTCAAAGGATCTGAAATCCCCTATCAG
GAAGCCAGCTCCAGCGGAGCGACCAGTACGTCGTTCAAGGAGGCGGTGCTGTCGTTGGAAGTGACCCCACAAATCACACC
GGACAATCGCATTATCATGGAAGTCAAGGTCACCAAGGATGCGCCGGACTATGCAAACGCGCTCAATGATGTTCCGCCTA
TTAATAAGAACGAAGTAAATGCCAAAGTACTGGTCAACGATGGTGAAACCATTGTCATCGGTGGCGTTTTCTCGAACACC
CAGAGCCGCTCAGTCGACAAGGTGCCGTTGCTGGGGGATTTGCCCTTCCTCGGTCGCCTGTTCCGTCGCGACTCCGTTAC
GGAGGAGAAATCGGAGCTGTTGGTCTTTCTTACTCCGCGTATAGTAAACAACAACGCCATAGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(373-439)

Secretin and TonB N terminus short domain (STN)

(300-346)

Bacterial type II and III secretion system protein (Secretin)

(526-682)

AMIN domain (AMIN)

(39-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.853

100

0.768
  comQ Acinetobacter baylyi ADP1

42.754

99.855

0.427
  pilQ Acinetobacter baumannii strain A118

39.696

100

0.415
  pilQ Acinetobacter baumannii D1279779

39.696

100

0.415
  pilQ Legionella pneumophila strain ERS1305867

38.201

98.119

0.375
  pilQ Legionella pneumophila strain Lp02

38.053

98.119

0.373