Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6G44_RS01870 | Genome accession | NZ_CP065702 |
| Coordinates | 363839..364291 (+) | Length | 150 a.a. |
| NCBI ID | WP_010905690.1 | Uniprot ID | A0AAC9R1D2 |
| Organism | Lactococcus lactis strain FDAARGOS_887 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 358839..369291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G44_RS01820 (I6G44_01820) | - | 359193..359630 (-) | 438 | WP_010905681.1 | ImmA/IrrE family metallo-endopeptidase | - |
| I6G44_RS01825 (I6G44_01825) | - | 359627..360169 (-) | 543 | WP_010905682.1 | helix-turn-helix domain-containing protein | - |
| I6G44_RS01830 (I6G44_01830) | - | 360338..360556 (+) | 219 | WP_010905683.1 | DUF739 family protein | - |
| I6G44_RS01835 (I6G44_01835) | - | 360593..361336 (+) | 744 | WP_010905684.1 | ORF6C domain-containing protein | - |
| I6G44_RS01840 (I6G44_01840) | - | 361349..361684 (+) | 336 | WP_197932599.1 | DUF771 domain-containing protein | - |
| I6G44_RS01845 (I6G44_01845) | - | 361822..362016 (+) | 195 | WP_010905685.1 | hypothetical protein | - |
| I6G44_RS01850 (I6G44_01850) | - | 362013..362288 (-) | 276 | WP_023349243.1 | hypothetical protein | - |
| I6G44_RS01855 (I6G44_01855) | - | 362391..362606 (+) | 216 | WP_015966756.1 | DUF1408 domain-containing protein | - |
| I6G44_RS01860 (I6G44_01860) | - | 362722..363240 (+) | 519 | WP_010905688.1 | host-nuclease inhibitor Gam family protein | - |
| I6G44_RS01865 (I6G44_01865) | - | 363249..363839 (+) | 591 | WP_197932600.1 | DUF1071 domain-containing protein | - |
| I6G44_RS01870 (I6G44_01870) | ssb | 363839..364291 (+) | 453 | WP_010905690.1 | single-stranded DNA-binding protein | Machinery gene |
| I6G44_RS01875 (I6G44_01875) | - | 364416..365198 (+) | 783 | WP_015966758.1 | phage replisome organizer protein | - |
| I6G44_RS01880 (I6G44_01880) | - | 365198..365923 (+) | 726 | WP_015966759.1 | hypothetical protein | - |
| I6G44_RS01885 (I6G44_01885) | - | 365920..366309 (+) | 390 | WP_002819817.1 | RusA family crossover junction endodeoxyribonuclease | - |
| I6G44_RS01890 (I6G44_01890) | - | 366312..366506 (+) | 195 | WP_010905693.1 | hypothetical protein | - |
| I6G44_RS01895 (I6G44_01895) | - | 366499..366738 (+) | 240 | WP_031297271.1 | DUF1031 family protein | - |
| I6G44_RS01900 (I6G44_01900) | - | 366856..367116 (+) | 261 | WP_223203848.1 | hypothetical protein | - |
| I6G44_RS01905 (I6G44_01905) | - | 367138..367317 (+) | 180 | WP_197932601.1 | DUF1497 domain-containing protein | - |
| I6G44_RS01910 (I6G44_01910) | - | 367307..367876 (+) | 570 | WP_197932602.1 | DUF658 family protein | - |
| I6G44_RS01915 (I6G44_01915) | - | 368070..368276 (+) | 207 | WP_010905356.1 | DUF1125 domain-containing protein | - |
| I6G44_RS01920 (I6G44_01920) | - | 368269..368541 (+) | 273 | WP_010905357.1 | hypothetical protein | - |
| I6G44_RS01925 (I6G44_01925) | - | 368538..369092 (+) | 555 | WP_010905358.1 | DUF1642 domain-containing protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 16643.67 Da Isoelectric Point: 8.9728
>NTDB_id=513126 I6G44_RS01870 WP_010905690.1 363839..364291(+) (ssb) [Lactococcus lactis strain FDAARGOS_887]
MINNVVLVGRLTRDPELRHTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQQAENLAKFAKKGALIGITGRIQTR
NYENQQGQKVYVTEVVADTFQMLESNKTQGQQTSKPQAQNKKPQAPDPFKAPAADPFAGGTEISDDDLPF
MINNVVLVGRLTRDPELRHTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQQAENLAKFAKKGALIGITGRIQTR
NYENQQGQKVYVTEVVADTFQMLESNKTQGQQTSKPQAQNKKPQAPDPFKAPAADPFAGGTEISDDDLPF
Nucleotide
Download Length: 453 bp
>NTDB_id=513126 I6G44_RS01870 WP_010905690.1 363839..364291(+) (ssb) [Lactococcus lactis strain FDAARGOS_887]
ATGATTAATAATGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGACATACACCACAGAACCAAGCAGTAGG
TACATTTGGATTAGCTGTAAATCGCCAGTTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGACAACAAGCCGAAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATTGGAATAACTGGACGGATTCAAACAAGG
AACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGAAAGCAATAA
AACACAAGGTCAGCAAACAAGTAAACCGCAAGCTCAAAATAAAAAGCCACAAGCACCAGACCCTTTTAAAGCTCCTGCTG
CTGATCCATTTGCTGGTGGTACTGAAATTTCAGATGATGACCTACCATTTTAA
ATGATTAATAATGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGACATACACCACAGAACCAAGCAGTAGG
TACATTTGGATTAGCTGTAAATCGCCAGTTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGACAACAAGCCGAAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATTGGAATAACTGGACGGATTCAAACAAGG
AACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGAAAGCAATAA
AACACAAGGTCAGCAAACAAGTAAACCGCAAGCTCAAAATAAAAAGCCACAAGCACCAGACCCTTTTAAAGCTCCTGCTG
CTGATCCATTTGCTGGTGGTACTGAAATTTCAGATGATGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.14 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.907 |
100 |
0.607 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.654 |
69.333 |
0.407 |
| ssb | Neisseria meningitidis MC58 |
34.302 |
100 |
0.393 |
| ssb | Neisseria gonorrhoeae MS11 |
33.721 |
100 |
0.387 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
52.381 |
70 |
0.367 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.429 |
70 |
0.36 |