Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   I6G50_RS00475 Genome accession   NZ_CP065691
Coordinates   60245..60844 (-) Length   199 a.a.
NCBI ID   WP_003135136.1    Uniprot ID   K2PKK9
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 55245..65844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS00445 (I6G50_00445) ribE 55477..56118 (+) 642 WP_003135142.1 riboflavin synthase -
  I6G50_RS00450 (I6G50_00450) - 56128..57330 (+) 1203 WP_197908848.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  I6G50_RS00455 (I6G50_00455) ribE 57373..57840 (+) 468 WP_197908849.1 6,7-dimethyl-8-ribityllumazine synthase -
  I6G50_RS00460 (I6G50_00460) - 58081..58494 (-) 414 WP_081165165.1 organic hydroperoxide resistance protein -
  I6G50_RS00465 (I6G50_00465) - 58604..59044 (+) 441 WP_003135138.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6G50_RS00470 (I6G50_00470) - 59536..59892 (+) 357 WP_042753119.1 ArsC/Spx/MgsR family protein -
  I6G50_RS00475 (I6G50_00475) clpP 60245..60844 (-) 600 WP_003135136.1 ATP-dependent Clp protease proteolytic subunit Regulator
  I6G50_RS00480 (I6G50_00480) - 61032..61409 (+) 378 WP_197908850.1 VOC family protein -
  I6G50_RS00485 (I6G50_00485) - 61472..62002 (+) 531 WP_197908851.1 hypothetical protein -
  I6G50_RS00490 (I6G50_00490) spx 62174..62572 (+) 399 WP_003135131.1 transcriptional regulator Spx -
  I6G50_RS00495 (I6G50_00495) - 62749..63519 (+) 771 WP_003135129.1 TatD family hydrolase -
  I6G50_RS00500 (I6G50_00500) rnmV 63513..64064 (+) 552 WP_197909388.1 ribonuclease M5 -
  I6G50_RS00505 (I6G50_00505) - 64061..64987 (+) 927 WP_197908852.1 ABC transporter ATP-binding protein -
  I6G50_RS00510 (I6G50_00510) - 64980..65750 (+) 771 WP_003135123.1 ABC transporter permease -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21810.86 Da        Isoelectric Point: 4.5519

>NTDB_id=512996 I6G50_RS00475 WP_003135136.1 60245..60844(-) (clpP) [Lactococcus garvieae strain FDAARGOS_893]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGEVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN
SGQTLEKVHDDAERDNWLTAQETLDYGFIDEIMEANSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=512996 I6G50_RS00475 WP_003135136.1 60245..60844(-) (clpP) [Lactococcus garvieae strain FDAARGOS_893]
ATGGGATATTTAGTACCTACTGTCATCGAACAATCAAGCCGTGGTGAACGTGCCTATGACATCTACAGCCGTCTATTAAA
AGACCGTATCATCATGTTGACTGGTGAGGTTGAGGATGGTATGGCCAACTCAATCATCGCGCAACTCCTCTTCTTGGATG
CCCAAGACAGCACAAAAGACATTTACCTCTACATCAACACACCTGGTGGTTCTGTTTCTGCTGGTCTTGCGATTGTTGAT
ACAATGAACTTCATCAAATCTGATGTTCAAACAATCGTTATGGGTATCGCCGCATCTATGGGTACAATCATTGCATCAAG
TGGTACAAAAGGTAAACGTTTCATGTTACCACATGCTGAATATATGATTCACCAACCTATGGGTGGCACTGGTGGTGGTA
CACAACAAACAGATATGGCTATCGCTGCTGAACACCTGCTCAAAACACGTCGTACTTTAGAAAAAATCTTGGCTGAAAAC
TCTGGTCAAACACTGGAAAAAGTACATGACGATGCGGAACGTGACAACTGGTTGACTGCTCAAGAAACACTTGACTATGG
TTTCATTGATGAAATCATGGAAGCAAATAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K2PKK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.437

100

0.874
  clpP Lactococcus lactis subsp. cremoris KW2

86.935

100

0.869
  clpP Streptococcus pneumoniae Rx1

87.755

98.492

0.864
  clpP Streptococcus pneumoniae D39

87.755

98.492

0.864
  clpP Streptococcus pneumoniae R6

87.755

98.492

0.864
  clpP Streptococcus pneumoniae TIGR4

87.755

98.492

0.864
  clpP Streptococcus thermophilus LMG 18311

87.245

98.492

0.859
  clpP Streptococcus thermophilus LMD-9

87.245

98.492

0.859
  clpP Streptococcus pyogenes JRS4

84.184

98.492

0.829
  clpP Streptococcus pyogenes MGAS315

84.184

98.492

0.829
  clpP Streptococcus mutans UA159

84.184

98.492

0.829
  clpP Bacillus subtilis subsp. subtilis str. 168

58.947

95.477

0.563
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553