NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	I4W80_RS16140	Genome accession	NZ_CP065591
Coordinates	3122190..3122786 (+)	Length	198 a.a.
NCBI ID	WP_007500118.1	Uniprot ID	-
Organism	Bacillus altitudinis strain 1817
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3117190..3127786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I4W80_RS16120 (I4W80_16120)	nikA	3117520..3119163 (-)	1644	WP_035389467.1	nickel ABC transporter substrate-binding protein	-
I4W80_RS16125 (I4W80_16125)	-	3119454..3120623 (-)	1170	WP_035389468.1	macrolide family glycosyltransferase	-
I4W80_RS16130 (I4W80_16130)	-	3120810..3121361 (-)	552	WP_017359180.1	hypothetical protein	-
I4W80_RS16140 (I4W80_16140)	clpP	3122190..3122786 (+)	597	WP_007500118.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
I4W80_RS16145 (I4W80_16145)	-	3122842..3123420 (-)	579	WP_017368101.1	TIGR00730 family Rossman fold protein	-
I4W80_RS16150 (I4W80_16150)	-	3123557..3123898 (+)	342	WP_047945650.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
I4W80_RS16155 (I4W80_16155)	-	3123928..3125550 (-)	1623	WP_035701494.1	SulP family inorganic anion transporter	-
I4W80_RS16160 (I4W80_16160)	-	3125588..3126169 (-)	582	WP_017357909.1	beta-class carbonic anhydrase	-
I4W80_RS16165 (I4W80_16165)	-	3126733..3127710 (+)	978	WP_035701636.1	2-hydroxyacid dehydrogenase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21846.03 Da Isoelectric Point: 4.6905

                                >NTDB_id=512140 I4W80_RS16140 WP_007500118.1 3122190..3122786(+) (clpP) [Bacillus altitudinis strain 1817]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ

PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=512140 I4W80_RS16140 WP_007500118.1 3122190..3122786(+) (clpP) [Bacillus altitudinis strain 1817]

ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA

CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTATCACAGCTTCTCTTCTTAGAAGCCG

AGGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG

ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG

TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGTGGTGCGCAAGGTCAAGCAA

CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG

CCAATTGAAGTCATTGAACGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA

CAAAGTCTTGACCCGTAATACAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	93.434	100	0.934
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.539	96.465	0.652
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Lactococcus lactis subsp. cremoris KW2	56.186	97.98	0.551
clpP	Streptococcus pneumoniae Rx1	55.67	97.98	0.545
clpP	Streptococcus pneumoniae D39	55.67	97.98	0.545
clpP	Streptococcus pneumoniae R6	55.67	97.98	0.545
clpP	Streptococcus pneumoniae TIGR4	55.67	97.98	0.545
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.124	97.98	0.53

Detailed information NTG0512140