Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SPAF_RS07745 Genome accession   NC_017905
Coordinates   1560983..1561573 (-) Length   196 a.a.
NCBI ID   WP_014713704.1    Uniprot ID   I1ZN90
Organism   Streptococcus parasanguinis FW213     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555983..1566573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS07720 (Spaf_1540) - 1556651..1557415 (-) 765 WP_003005595.1 ABC transporter ATP-binding protein -
  SPAF_RS07725 (Spaf_1541) - 1557415..1558362 (-) 948 WP_013903960.1 branched-chain amino acid ABC transporter permease -
  SPAF_RS07730 (Spaf_1542) - 1558366..1559235 (-) 870 WP_021153669.1 branched-chain amino acid ABC transporter permease -
  SPAF_RS07735 (Spaf_1543) - 1559317..1560474 (-) 1158 WP_014713702.1 ABC transporter substrate-binding protein -
  SPAF_RS07740 (Spaf_1544) - 1560583..1560861 (-) 279 WP_014713703.1 DUF2129 domain-containing protein -
  SPAF_RS07745 (Spaf_1545) clpP 1560983..1561573 (-) 591 WP_014713704.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SPAF_RS07750 (Spaf_1546) upp 1561703..1562332 (-) 630 WP_003005574.1 uracil phosphoribosyltransferase -
  SPAF_RS07755 (Spaf_1547) mgtA 1562553..1565213 (-) 2661 WP_041826411.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21484.51 Da        Isoelectric Point: 4.5022

>NTDB_id=51144 SPAF_RS07745 WP_014713704.1 1560983..1561573(-) (clpP) [Streptococcus parasanguinis FW213]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILADNSGQ
SIEKVHADAERDNWMSAQETLEYGFIDEIMANNKLD

Nucleotide


Download         Length: 591 bp        

>NTDB_id=51144 SPAF_RS07745 WP_014713704.1 1560983..1561573(-) (clpP) [Streptococcus parasanguinis FW213]
ATGATTCCAGTAGTTATTGAACAAACCAGTCGTGGAGAGCGTTCTTACGATATTTATTCCCGTCTGTTGAAAGATCGAAT
TATCATGGTAACAGGACCAGTTGAGGACCAAATGGCTAACTCCATTATCGCTCAATTGCTCTTCTTGGATGCCCAAGATA
ATACAAAAGATATCTATATGTATATCAATACTCCAGGTGGCTCTGTCTCTGCAGGTCTCGCCATCGTAGATACCATGAAC
TTTATCAAGTCAGATGTCCAAACTATTGTTATGGGGATGGCGGCTTCTATGGGAACTATCATTGCTTCAAGCGGTGCGAA
GGGCAAACGCTTCATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTGGTACTGGTGGTGGTACCCAACAAA
CCGATATGGCGATCGCAGCAGAACACTTGCTCAAAACACGGAATAACTTGGAAAAAATCCTTGCGGACAATTCAGGTCAA
TCCATTGAAAAAGTGCATGCTGATGCCGAACGTGACAATTGGATGAGCGCGCAAGAAACACTTGAATATGGCTTTATTGA
TGAAATCATGGCCAATAATAAATTGGACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1ZN90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

94.359

99.49

0.939
  clpP Streptococcus thermophilus LMD-9

94.359

99.49

0.939
  clpP Streptococcus pneumoniae Rx1

93.367

100

0.934
  clpP Streptococcus pneumoniae D39

93.367

100

0.934
  clpP Streptococcus pneumoniae R6

93.367

100

0.934
  clpP Streptococcus pneumoniae TIGR4

93.367

100

0.934
  clpP Streptococcus mutans UA159

88.205

99.49

0.878
  clpP Streptococcus pyogenes JRS4

88.205

99.49

0.878
  clpP Streptococcus pyogenes MGAS315

88.205

99.49

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.641

99.49

0.852
  clpP Lactococcus lactis subsp. cremoris KW2

85.128

99.49

0.847
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.216

98.98

0.566

Multiple sequence alignment