Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | IQ781_RS02145 | Genome accession | NZ_CP065509 |
| Coordinates | 428835..429416 (+) | Length | 193 a.a. |
| NCBI ID | WP_000991613.1 | Uniprot ID | A0A9W5L4X9 |
| Organism | Bacillus sp. N447-1 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 400121..429416 | 428835..429416 | within | 0 |
Gene organization within MGE regions
Location: 400121..429416
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQ781_RS01980 (IQ781_01980) | - | 400121..400855 (+) | 735 | WP_000135290.1 | N-acetylmuramoyl-L-alanine amidase | - |
| IQ781_RS01985 (IQ781_01985) | - | 401299..402129 (+) | 831 | WP_063220353.1 | GH25 family lysozyme | - |
| IQ781_RS01990 | - | 402347..402574 (+) | 228 | WP_100651714.1 | hypothetical protein | - |
| IQ781_RS01995 (IQ781_01990) | - | 402519..402971 (-) | 453 | WP_000877569.1 | hypothetical protein | - |
| IQ781_RS02000 (IQ781_01995) | - | 403106..403461 (-) | 356 | Protein_403 | cytoplasmic protein | - |
| IQ781_RS02005 (IQ781_02000) | - | 403639..404262 (-) | 624 | WP_000287732.1 | hypothetical protein | - |
| IQ781_RS02010 (IQ781_02005) | recQ | 405373..407490 (+) | 2118 | WP_000494263.1 | DNA helicase RecQ | - |
| IQ781_RS02015 (IQ781_02010) | - | 407516..407899 (+) | 384 | WP_000274899.1 | gamma-glutamylcyclotransferase | - |
| IQ781_RS02020 (IQ781_02015) | - | 408081..408824 (+) | 744 | WP_069355748.1 | class I SAM-dependent methyltransferase | - |
| IQ781_RS02025 (IQ781_02020) | - | 408880..410230 (+) | 1351 | Protein_408 | IS3 family transposase | - |
| IQ781_RS02030 (IQ781_02025) | - | 410289..411134 (-) | 846 | WP_139846758.1 | CPBP family glutamic-type intramembrane protease | - |
| IQ781_RS02035 (IQ781_02030) | - | 411467..413542 (+) | 2076 | WP_139846759.1 | UvrD-helicase domain-containing protein | - |
| IQ781_RS02040 (IQ781_02035) | - | 413659..414386 (-) | 728 | Protein_411 | hypothetical protein | - |
| IQ781_RS02045 (IQ781_02040) | - | 414676..414858 (+) | 183 | WP_242808322.1 | hypothetical protein | - |
| IQ781_RS02050 (IQ781_02045) | - | 415299..415646 (+) | 348 | WP_000380296.1 | PadR family transcriptional regulator | - |
| IQ781_RS02055 (IQ781_02050) | - | 415633..416634 (+) | 1002 | WP_000052353.1 | hypothetical protein | - |
| IQ781_RS02060 (IQ781_02055) | - | 416715..417227 (+) | 513 | WP_100651710.1 | GNAT family N-acetyltransferase | - |
| IQ781_RS02065 (IQ781_02060) | - | 417353..418129 (+) | 777 | WP_060852056.1 | class A beta-lactamase | - |
| IQ781_RS02070 (IQ781_02065) | - | 418126..418497 (+) | 372 | WP_078386548.1 | hypothetical protein | - |
| IQ781_RS02075 (IQ781_02070) | - | 418526..418942 (+) | 417 | WP_000680537.1 | GNAT family N-acetyltransferase | - |
| IQ781_RS02080 (IQ781_02075) | - | 418978..419382 (+) | 405 | WP_060852057.1 | GNAT family N-acetyltransferase | - |
| IQ781_RS02085 (IQ781_02080) | - | 419398..419751 (+) | 354 | WP_000994621.1 | MmcQ/YjbR family DNA-binding protein | - |
| IQ781_RS02090 (IQ781_02085) | - | 419773..420479 (+) | 707 | Protein_421 | class I SAM-dependent methyltransferase | - |
| IQ781_RS02095 (IQ781_02090) | - | 420544..420930 (+) | 387 | WP_078386549.1 | DUF2809 domain-containing protein | - |
| IQ781_RS02100 (IQ781_02095) | - | 420955..421884 (+) | 930 | WP_078386550.1 | phosphotransferase | - |
| IQ781_RS02105 (IQ781_02100) | - | 421881..422384 (+) | 504 | WP_000720558.1 | DNA topology modulation protein | - |
| IQ781_RS02110 (IQ781_02105) | - | 422546..423226 (+) | 681 | WP_078386551.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | - |
| IQ781_RS02115 (IQ781_02110) | - | 423319..424512 (+) | 1194 | WP_078386552.1 | macrolide family glycosyltransferase | - |
| IQ781_RS02120 (IQ781_02115) | - | 424953..426320 (+) | 1368 | WP_078386553.1 | lytic polysaccharide monooxygenase | - |
| IQ781_RS02125 (IQ781_02120) | - | 426448..426882 (-) | 435 | WP_065212632.1 | GNAT family N-acetyltransferase | - |
| IQ781_RS02130 (IQ781_02125) | rpiA | 426997..427659 (-) | 663 | WP_001049992.1 | ribose 5-phosphate isomerase A | - |
| IQ781_RS02135 (IQ781_02130) | - | 427664..427984 (-) | 321 | WP_001125388.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
| IQ781_RS02140 (IQ781_02135) | - | 428127..428813 (+) | 687 | WP_139846761.1 | RNA polymerase subunit sigma-70 | - |
| IQ781_RS02145 (IQ781_02140) | clpP | 428835..429416 (+) | 582 | WP_000991613.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | Regulator |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 21220.50 Da Isoelectric Point: 5.0776
>NTDB_id=511410 IQ781_RS02145 WP_000991613.1 428835..429416(+) (clpP) [Bacillus sp. N447-1]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKVYGIVDDVVTKK
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKVYGIVDDVVTKK
Nucleotide
Download Length: 582 bp
>NTDB_id=511410 IQ781_RS02145 WP_000991613.1 428835..429416(+) (clpP) [Bacillus sp. N447-1]
ATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGTATTATTATTATCGGCTCAGAAATTAACGATCAAGTAGCGAGTAGTGTCGTAGCGCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTCTTATACATCAATAGCCCCGGCGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTGCAAACACTGTGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCGCTCCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAAGGGCAAGCAA
CAGAAATTGAAATAACTGCGAAAAGAATATTGAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGCCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGTATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA
ATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGTATTATTATTATCGGCTCAGAAATTAACGATCAAGTAGCGAGTAGTGTCGTAGCGCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTCTTATACATCAATAGCCCCGGCGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTGCAAACACTGTGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCGCTCCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAAGGGCAAGCAA
CAGAAATTGAAATAACTGCGAAAAGAATATTGAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGCCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGTATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
68.586 |
98.964 |
0.679 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
67.196 |
97.927 |
0.658 |
| clpP | Streptococcus thermophilus LMD-9 |
55.208 |
99.482 |
0.549 |
| clpP | Streptococcus pneumoniae Rx1 |
55.208 |
99.482 |
0.549 |
| clpP | Streptococcus pneumoniae D39 |
55.208 |
99.482 |
0.549 |
| clpP | Streptococcus pneumoniae TIGR4 |
55.208 |
99.482 |
0.549 |
| clpP | Streptococcus pneumoniae R6 |
55.208 |
99.482 |
0.549 |
| clpP | Streptococcus thermophilus LMG 18311 |
55.208 |
99.482 |
0.549 |
| clpP | Streptococcus pyogenes JRS4 |
55.556 |
97.927 |
0.544 |
| clpP | Streptococcus pyogenes MGAS315 |
55.556 |
97.927 |
0.544 |
| clpP | Streptococcus mutans UA159 |
53.968 |
97.927 |
0.528 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
52.381 |
97.927 |
0.513 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.265 |
97.927 |
0.492 |