Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   STCNRZ1575_RS01525 Genome accession   NZ_CP065490
Coordinates   273177..273413 (+) Length   78 a.a.
NCBI ID   WP_260214320.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 268177..278413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS01500 (STCNRZ1575_01515) - 269355..269864 (+) 510 WP_011680717.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  STCNRZ1575_RS01505 (STCNRZ1575_01520) - 270176..270733 (+) 558 WP_002949523.1 ECF transporter S component -
  STCNRZ1575_RS01510 (STCNRZ1575_01525) - 270736..271386 (+) 651 WP_095559229.1 phosphatase PAP2 family protein -
  STCNRZ1575_RS01515 (STCNRZ1575_01530) comR 271581..272480 (+) 900 WP_179974221.1 helix-turn-helix domain-containing protein Regulator
  STCNRZ1575_RS01520 - 272718..273014 (+) 297 Protein_233 cysteine peptidase family C39 domain-containing protein -
  STCNRZ1575_RS01525 comA 273177..273413 (+) 237 WP_260214320.1 ABC transporter transmembrane domain-containing protein Regulator
  STCNRZ1575_RS01530 - 273403..273897 (+) 495 Protein_235 ABC transporter transmembrane domain-containing protein -
  STCNRZ1575_RS01535 comA 273919..274128 (+) 210 WP_002946147.1 hypothetical protein Regulator
  STCNRZ1575_RS01540 (STCNRZ1575_01555) - 274183..274751 (+) 569 Protein_237 ATP-binding cassette domain-containing protein -
  STCNRZ1575_RS01545 (STCNRZ1575_01560) - 274859..275176 (+) 318 WP_011225454.1 DUF805 domain-containing protein -
  STCNRZ1575_RS01550 - 275139..275423 (-) 285 WP_014727318.1 hypothetical protein -
  STCNRZ1575_RS01555 - 275663..276559 (-) 897 WP_260214319.1 urease cluster protein -
  STCNRZ1575_RS01560 (STCNRZ1575_01570) - 276964..277479 (+) 516 WP_002949547.1 AmiS/UreI family transporter -
  STCNRZ1575_RS01565 (STCNRZ1575_01575) - 277504..277806 (+) 303 WP_002886558.1 urease subunit gamma -
  STCNRZ1575_RS01570 (STCNRZ1575_01580) - 277818..278129 (+) 312 WP_002886559.1 urease subunit beta -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9070.78 Da        Isoelectric Point: 7.2703

>NTDB_id=510763 STCNRZ1575_RS01525 WP_260214320.1 273177..273413(+) (comA) [Streptococcus thermophilus strain CNRZ1575]
MVTFVNIIGSYYLQSIIDRLIPQEDYSLLIVISLGLCIAYLAQQVFTFFKDYLLHRLGNYLSISVILPYIKHVPFFAH

Nucleotide


Download         Length: 237 bp        

>NTDB_id=510763 STCNRZ1575_RS01525 WP_260214320.1 273177..273413(+) (comA) [Streptococcus thermophilus strain CNRZ1575]
ATGGTGACCTTTGTTAATATTATTGGTTCTTATTATTTGCAGTCTATTATAGACCGCTTGATTCCTCAAGAAGACTATTC
TCTTCTGATTGTGATTTCTCTCGGTTTGTGCATCGCCTATCTAGCCCAACAAGTCTTCACTTTTTTCAAAGATTATCTTC
TACATCGATTGGGTAATTACTTGTCCATTTCTGTTATCCTTCCTTATATCAAGCATGTTCCTTTCTTTGCCCATTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(2-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

53.659

100

0.564
  comA Streptococcus mitis SK321

53.659

100

0.564
  comA Streptococcus pneumoniae Rx1

53.659

100

0.564
  comA Streptococcus pneumoniae D39

53.659

100

0.564
  comA Streptococcus pneumoniae R6

53.659

100

0.564
  comA Streptococcus pneumoniae TIGR4

53.659

100

0.564
  comA Streptococcus gordonii str. Challis substr. CH1

52.439

100

0.551
  comA/nlmT Streptococcus mutans UA159

50

100

0.526