Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   STAVA1121_RS04605 Genome accession   NZ_CP065488
Coordinates   862271..862459 (+) Length   62 a.a.
NCBI ID   WP_096811419.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 862760..863100 862271..862459 flank 301


Gene organization within MGE regions


Location: 862271..863100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS04605 (STAVA1121_04535) prx 862271..862459 (+) 189 WP_096811419.1 hypothetical protein Regulator
  STAVA1121_RS04610 (STAVA1121_04540) - 862655..863100 (-) 446 Protein_850 transposase -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7149.11 Da        Isoelectric Point: 4.5720

>NTDB_id=510663 STAVA1121_RS04605 WP_096811419.1 862271..862459(+) (prx) [Streptococcus thermophilus strain AVA1121]
MLTYDEFKEAMDKGFIKGDTVQIVRKNGKIYDYVLDGERVDPHETLSLEKVSDIIKELGKDN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=510663 STAVA1121_RS04605 WP_096811419.1 862271..862459(+) (prx) [Streptococcus thermophilus strain AVA1121]
ATGCTAACCTATGATGAATTTAAAGAGGCAATGGACAAGGGTTTTATTAAAGGTGATACTGTTCAGATTGTCCGAAAGAA
TGGTAAAATATATGACTACGTTTTAGACGGTGAACGAGTTGATCCACACGAAACATTGAGCTTAGAAAAGGTATCGGATA
TAATAAAGGAACTAGGCAAGGACAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

56.667

96.774

0.548
  prx Streptococcus pyogenes MGAS8232

56.667

96.774

0.548
  prx Streptococcus pyogenes MGAS315

56.667

96.774

0.548
  prx Streptococcus pyogenes MGAS315

55

96.774

0.532
  prx Streptococcus pyogenes MGAS315

73.81

67.742

0.5
  prx Streptococcus pyogenes MGAS315

68.182

70.968

0.484
  prx Streptococcus pyogenes MGAS315

75

64.516

0.484