Detailed information NTG0510447

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: STMM1_RS08840
• Genome accession: NZ_CP065484
• Coordinates: 1695717..1696145 (-)
• Length: 142 a.a.
• NCBI ID: WP_257608452.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain MM1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1690717..1701145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STMM1_RS08795 (STMM1_08730)	-	1690854..1691297 (-)	444	WP_011681680.1	hypothetical protein	-
STMM1_RS08800	-	1691371..1691709 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
STMM1_RS08805	-	1691753..1692028 (-)	276	WP_011681681.1	hypothetical protein	-
STMM1_RS08810 (STMM1_08740)	-	1692040..1692237 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
STMM1_RS08815 (STMM1_08745)	-	1692486..1693679 (-)	1194	WP_014608740.1	acetate kinase	-
STMM1_RS08820 (STMM1_08750)	comYH	1693735..1694691 (-)	957	WP_011681684.1	class I SAM-dependent methyltransferase	Machinery gene
STMM1_RS08825 (STMM1_08755)	comGG	1694736..1695053 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
STMM1_RS08830 (STMM1_08760)	comYF	1695031..1695468 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
STMM1_RS08835 (STMM1_08765)	comGE	1695452..1695745 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STMM1_RS08840 (STMM1_08770)	comYD	1695717..1696145 (-)	429	WP_257608452.1	competence type IV pilus minor pilin ComGD	Machinery gene
STMM1_RS08845 (STMM1_08775)	comYC	1696105..1696431 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STMM1_RS08850 (STMM1_08780)	comYB	1696428..1697528 (-)	1101	WP_142350125.1	competence type IV pilus assembly protein ComGB	Machinery gene
STMM1_RS08855 (STMM1_08785)	comGA/cglA/cilD	1697410..1698351 (-)	942	WP_071417491.1	competence type IV pilus ATPase ComGA	Machinery gene
STMM1_RS08860 (STMM1_08790)	-	1698432..1698794 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15887.46 Da
• Isoelectric Point: 10.3673

>NTDB_id=510447 STMM1_RS08840 WP_257608452.1 1695717..1696145(-) (comYD) [Streptococcus thermophilus strain MM1]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTRD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=510447 STMM1_RS08840 WP_257608452.1 1695717..1696145(-) (comYD) [Streptococcus thermophilus strain MM1]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAGGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCGAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38