Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   STMM1_RS08850 Genome accession   NZ_CP065484
Coordinates   1696428..1697528 (-) Length   366 a.a.
NCBI ID   WP_142350125.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1691428..1702528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM1_RS08805 - 1691753..1692028 (-) 276 WP_011681681.1 hypothetical protein -
  STMM1_RS08810 (STMM1_08740) - 1692040..1692237 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STMM1_RS08815 (STMM1_08745) - 1692486..1693679 (-) 1194 WP_014608740.1 acetate kinase -
  STMM1_RS08820 (STMM1_08750) comYH 1693735..1694691 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  STMM1_RS08825 (STMM1_08755) comGG 1694736..1695053 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STMM1_RS08830 (STMM1_08760) comYF 1695031..1695468 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  STMM1_RS08835 (STMM1_08765) comGE 1695452..1695745 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STMM1_RS08840 (STMM1_08770) comYD 1695717..1696145 (-) 429 WP_257608452.1 competence type IV pilus minor pilin ComGD Machinery gene
  STMM1_RS08845 (STMM1_08775) comYC 1696105..1696431 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STMM1_RS08850 (STMM1_08780) comYB 1696428..1697528 (-) 1101 WP_142350125.1 competence type IV pilus assembly protein ComGB Machinery gene
  STMM1_RS08855 (STMM1_08785) comGA/cglA/cilD 1697410..1698351 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  STMM1_RS08860 (STMM1_08790) - 1698432..1698794 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41862.00 Da        Isoelectric Point: 10.1377

>NTDB_id=510449 STMM1_RS08850 WP_142350125.1 1696428..1697528(-) (comYB) [Streptococcus thermophilus strain MM1]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRDLGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=510449 STMM1_RS08850 WP_142350125.1 1696428..1697528(-) (comYB) [Streptococcus thermophilus strain MM1]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTCATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGATCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCAGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.386

93.443

0.508
  comYB Streptococcus mutans UA159

54.386

93.443

0.508
  comYB Streptococcus gordonii str. Challis substr. CH1

50.877

93.443

0.475
  comGB/cglB Streptococcus mitis NCTC 12261

50.151

90.437

0.454
  comGB/cglB Streptococcus mitis SK321

49.394

90.164

0.445
  comGB/cglB Streptococcus pneumoniae Rx1

49.39

89.617

0.443
  comGB/cglB Streptococcus pneumoniae D39

49.39

89.617

0.443
  comGB/cglB Streptococcus pneumoniae R6

49.39

89.617

0.443
  comGB/cglB Streptococcus pneumoniae TIGR4

49.39

89.617

0.443
  comGB Lactococcus lactis subsp. cremoris KW2

45.455

90.164

0.41