Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STMM1_RS08820 Genome accession   NZ_CP065484
Coordinates   1693735..1694691 (-) Length   318 a.a.
NCBI ID   WP_011681684.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1688735..1699691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM1_RS08785 (STMM1_08720) proC 1689295..1690065 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STMM1_RS08790 (STMM1_08725) - 1690095..1690757 (-) 663 WP_011681679.1 type II CAAX endopeptidase family protein -
  STMM1_RS08795 (STMM1_08730) - 1690854..1691297 (-) 444 WP_011681680.1 hypothetical protein -
  STMM1_RS08800 - 1691371..1691709 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  STMM1_RS08805 - 1691753..1692028 (-) 276 WP_011681681.1 hypothetical protein -
  STMM1_RS08810 (STMM1_08740) - 1692040..1692237 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STMM1_RS08815 (STMM1_08745) - 1692486..1693679 (-) 1194 WP_014608740.1 acetate kinase -
  STMM1_RS08820 (STMM1_08750) comYH 1693735..1694691 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  STMM1_RS08825 (STMM1_08755) comGG 1694736..1695053 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STMM1_RS08830 (STMM1_08760) comYF 1695031..1695468 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  STMM1_RS08835 (STMM1_08765) comGE 1695452..1695745 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STMM1_RS08840 (STMM1_08770) comYD 1695717..1696145 (-) 429 WP_257608452.1 competence type IV pilus minor pilin ComGD Machinery gene
  STMM1_RS08845 (STMM1_08775) comYC 1696105..1696431 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STMM1_RS08850 (STMM1_08780) comYB 1696428..1697528 (-) 1101 WP_142350125.1 competence type IV pilus assembly protein ComGB Machinery gene
  STMM1_RS08855 (STMM1_08785) comGA/cglA/cilD 1697410..1698351 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  STMM1_RS08860 (STMM1_08790) - 1698432..1698794 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35843.02 Da        Isoelectric Point: 4.7891

>NTDB_id=510445 STMM1_RS08820 WP_011681684.1 1693735..1694691(-) (comYH) [Streptococcus thermophilus strain MM1]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=510445 STMM1_RS08820 WP_011681684.1 1693735..1694691(-) (comYH) [Streptococcus thermophilus strain MM1]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterProScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682