Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   I5V48_RS04000 Genome accession   NZ_CP065430
Coordinates   819073..819663 (+) Length   196 a.a.
NCBI ID   WP_043027209.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 814073..824663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS03980 (I5V48_03980) - 814207..815037 (+) 831 WP_002937312.1 carbohydrate ABC transporter permease -
  I5V48_RS03985 (I5V48_03985) gtfA 815107..816555 (+) 1449 WP_009910490.1 sucrose phosphorylase -
  I5V48_RS03990 (I5V48_03990) - 816628..818244 (+) 1617 WP_029173564.1 glycoside hydrolase family 13 protein -
  I5V48_RS03995 (I5V48_03995) upp 818327..818956 (+) 630 WP_002937309.1 uracil phosphoribosyltransferase -
  I5V48_RS04000 (I5V48_04000) clpP 819073..819663 (+) 591 WP_043027209.1 ATP-dependent Clp protease proteolytic subunit Regulator
  I5V48_RS04005 (I5V48_04005) - 819790..820062 (+) 273 WP_024381609.1 YlbG family protein -
  I5V48_RS04010 (I5V48_04010) - 820194..821366 (+) 1173 WP_043027210.1 ABC transporter substrate-binding protein -
  I5V48_RS04015 (I5V48_04015) - 821698..822861 (-) 1164 WP_172045700.1 IS30 family transposase -
  I5V48_RS04020 (I5V48_04020) - 823080..823967 (+) 888 WP_012027482.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21522.79 Da        Isoelectric Point: 5.7110

>NTDB_id=509519 I5V48_RS04000 WP_043027209.1 819073..819663(+) (clpP) [Streptococcus suis strain YZDH1]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKVDVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK
TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=509519 I5V48_RS04000 WP_043027209.1 819073..819663(+) (clpP) [Streptococcus suis strain YZDH1]
ATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTCACGCCTTTTAAAAGACCGCAT
TATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCACAATTGCTTTTCCTTGATGCCCAAGACC
CTACAAAGGATATTTACCTCTATGTTAACACGCCAGGAGGATCGGTGTCAGCAGGTCTTGCCATTGTAGACACGATGAAT
TTCATTAAAGTTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCATCATTGCATCAAGCGGTGCCAA
GGGAAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAGCCAATGGGTGGAACTGGTGGCGGTACTCAGCAAA
CGGATATGGCCATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATCTTGGCAGACAACTCAGGTAAG
ACAGTCAAGCAAATCCACAAGGATGCGGAACGTGATTACTGGATGTCAGCTGAAGAAACCTTGGCTTACGGATTTATTGA
CCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

91.837

100

0.918
  clpP Streptococcus pyogenes MGAS315

91.837

100

0.918
  clpP Streptococcus mutans UA159

90.306

100

0.903
  clpP Streptococcus thermophilus LMD-9

88.776

100

0.888
  clpP Streptococcus thermophilus LMG 18311

88.776

100

0.888
  clpP Streptococcus pneumoniae R6

88.265

100

0.883
  clpP Streptococcus pneumoniae Rx1

88.265

100

0.883
  clpP Streptococcus pneumoniae D39

88.265

100

0.883
  clpP Streptococcus pneumoniae TIGR4

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.184

100

0.842
  clpP Lactococcus lactis subsp. cremoris KW2

83.673

100

0.837
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

98.469

0.577