Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ITG08_RS10335 Genome accession   NZ_CP065206
Coordinates   2264026..2264325 (+) Length   99 a.a.
NCBI ID   WP_010439527.1    Uniprot ID   A0AAN0LKD1
Organism   Vibrio cyclitrophicus strain ED653     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2259026..2269325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG08_RS10325 (ITG08_10320) - 2261416..2261688 (+) 273 WP_004736083.1 HU family DNA-binding protein -
  ITG08_RS10330 (ITG08_10325) ppiD 2261910..2263781 (+) 1872 WP_016767081.1 peptidylprolyl isomerase -
  ITG08_RS10335 (ITG08_10330) comEA 2264026..2264325 (+) 300 WP_010439527.1 helix-hairpin-helix domain-containing protein Machinery gene
  ITG08_RS10340 (ITG08_10335) rrtA 2264345..2264881 (-) 537 WP_016767082.1 rhombosortase -
  ITG08_RS10345 (ITG08_10340) - 2264891..2265490 (+) 600 WP_010439531.1 DTW domain-containing protein -
  ITG08_RS10350 (ITG08_10345) - 2265522..2266865 (-) 1344 WP_010439534.1 anti-phage deoxyguanosine triphosphatase -
  ITG08_RS10355 (ITG08_10350) yfbR 2266920..2267504 (-) 585 WP_010439536.1 5'-deoxynucleotidase -
  ITG08_RS10360 (ITG08_10355) - 2267674..2268906 (-) 1233 WP_016767085.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10811.39 Da        Isoelectric Point: 5.1299

>NTDB_id=508025 ITG08_RS10335 WP_010439527.1 2264026..2264325(+) (comEA) [Vibrio cyclitrophicus strain ED653]
MRTIYSTLLLSFLITLSAGVFADSPTKAELYDGIEITVNINKATAEELSALLVGVGDKKAQEIVDYRDKHGAFTKPSDLV
NVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=508025 ITG08_RS10335 WP_010439527.1 2264026..2264325(+) (comEA) [Vibrio cyclitrophicus strain ED653]
ATGCGAACAATATATTCAACATTACTTCTTTCATTTCTAATTACTCTGAGTGCTGGAGTGTTTGCTGATAGTCCGACTAA
GGCAGAGTTGTACGACGGCATTGAAATCACCGTAAACATCAATAAAGCTACGGCTGAGGAATTATCAGCATTACTTGTTG
GTGTGGGTGACAAAAAAGCCCAAGAGATTGTCGATTATCGGGATAAGCATGGTGCATTTACAAAACCCAGTGACTTGGTC
AATGTGAAAGGTATTGGCGAGGCAACGGTTGAAAAGAATCGTGAGCGAATTCAACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

56.383

94.949

0.535
  comEA Vibrio campbellii strain DS40M4

55.435

92.929

0.515
  comEA Vibrio cholerae strain A1552

52.577

97.98

0.515
  comEA Vibrio cholerae C6706

52.577

97.98

0.515
  comE1/comEA Haemophilus influenzae Rd KW20

36.937

100

0.414
  comEA Acinetobacter baylyi ADP1

46.341

82.828

0.384
  comEA Lactococcus lactis subsp. cremoris KW2

44.444

81.818

0.364