Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   I0K14_RS13090 Genome accession   NZ_CP065149
Coordinates   2551633..2552214 (-) Length   193 a.a.
NCBI ID   WP_000991625.1    Uniprot ID   A0A2A8KY00
Organism   Bacillus paranthracis strain Gxun-30     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2546633..2557214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K14_RS13060 (I0K14_13060) - 2546650..2547486 (-) 837 WP_000557570.1 PP2C family serine/threonine-protein phosphatase -
  I0K14_RS13065 (I0K14_13065) - 2547470..2547955 (-) 486 WP_002163623.1 HIT family protein -
  I0K14_RS13070 (I0K14_13070) - 2548058..2548228 (-) 171 WP_002163622.1 hypothetical protein -
  I0K14_RS13075 (I0K14_13075) - 2548525..2549361 (-) 837 WP_001084762.1 ABC transporter permease -
  I0K14_RS13080 (I0K14_13080) - 2549354..2550559 (-) 1206 WP_000370623.1 quaternary amine ABC transporter ATP-binding protein -
  I0K14_RS13085 (I0K14_13085) - 2550730..2551587 (+) 858 WP_001227645.1 glycine betaine ABC transporter substrate-binding protein -
  I0K14_RS13090 (I0K14_13090) clpP 2551633..2552214 (-) 582 WP_000991625.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  I0K14_RS13095 (I0K14_13095) - 2552236..2552922 (-) 687 WP_000337497.1 RNA polymerase subunit sigma-70 -
  I0K14_RS13100 (I0K14_13100) - 2553066..2553386 (+) 321 WP_001125380.1 2Fe-2S iron-sulfur cluster-binding protein -
  I0K14_RS13105 (I0K14_13105) rpiA 2553391..2554052 (+) 662 Protein_2512 ribose 5-phosphate isomerase A -
  I0K14_RS13110 (I0K14_13110) - 2554160..2554594 (+) 435 WP_000555715.1 GNAT family N-acetyltransferase -
  I0K14_RS13115 (I0K14_13115) - 2554725..2556092 (-) 1368 WP_196240861.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21178.42 Da        Isoelectric Point: 5.0776

>NTDB_id=507385 I0K14_RS13090 WP_000991625.1 2551633..2552214(-) (clpP) [Bacillus paranthracis strain Gxun-30]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=507385 I0K14_RS13090 WP_000991625.1 2551633..2552214(-) (clpP) [Bacillus paranthracis strain Gxun-30]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATACTCAAGGTTATTAAAAGA
CCGTATTGTTATTATTGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGTCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTGGATACG
ATGAATTTAATCAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGCTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAAGGGCAAGCAA
CGGAAATTGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACCGCAGAAGAAGCAAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A8KY00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544
  clpP Streptococcus pneumoniae Rx1

54.688

99.482

0.544
  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544
  clpP Streptococcus pneumoniae D39

54.688

99.482

0.544
  clpP Streptococcus pneumoniae R6

54.688

99.482

0.544
  clpP Streptococcus pneumoniae TIGR4

54.688

99.482

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487