Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SANR_RS02240 Genome accession   NC_022239
Coordinates   436283..436948 (+) Length   221 a.a.
NCBI ID   WP_003035196.1    Uniprot ID   I0SHA5
Organism   Streptococcus anginosus C238     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431283..441948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS11070 - 432212..432481 (-) 270 Protein_401 IS30 family transposase -
  SANR_RS02220 - 432586..433247 (-) 662 Protein_402 ISL3 family transposase -
  SANR_RS02225 (SANR_0436) cysK 433264..434193 (-) 930 WP_003035221.1 cysteine synthase A -
  SANR_RS02230 (SANR_0437) - 434293..434928 (-) 636 WP_003035211.1 YigZ family protein -
  SANR_RS02235 (SANR_0438) comFA/cflA 434985..436286 (+) 1302 WP_003035191.1 DEAD/DEAH box helicase Machinery gene
  SANR_RS02240 (SANR_0439) comFC/cflB 436283..436948 (+) 666 WP_003035196.1 ComF family protein Machinery gene
  SANR_RS02245 (SANR_0440) hpf 437027..437569 (+) 543 WP_003035226.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SANR_RS02250 (SANR_0441) rsmD 437757..438305 (+) 549 WP_195190375.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SANR_RS02255 (SANR_0442) coaD 438295..438792 (+) 498 WP_003025749.1 pantetheine-phosphate adenylyltransferase -
  SANR_RS02260 (SANR_0443) sepM 438773..439828 (+) 1056 WP_003035215.1 SepM family pheromone-processing serine protease Regulator
  SANR_RS02265 (SANR_0444) - 439966..440529 (+) 564 WP_003035207.1 YutD family protein -
  SANR_RS02270 (SANR_0445) rlmN 440563..441646 (+) 1084 Protein_412 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25660.83 Da        Isoelectric Point: 8.0549

>NTDB_id=50717 SANR_RS02240 WP_003035196.1 436283..436948(+) (comFC/cflB) [Streptococcus anginosus C238]
MNSCVLCENPLDEKLKFCDLLTLKKPKARACDDCFEKFQRISAQHCPKCYRERTCEVCMDCQVWIEKGKEVYHKSCFVYN
EAMKDFFSQYKFQGDYALYSVFTEVLQRELKAYRDYALVPIPVSAEKYQTRGFNQVTALLEGAKLPFKEVLEKHDTIAQS
SKTRKERLQSQQCFKVKDNIQLPPKILLIDDIYTTGATLQLAKEILVEAGVKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=50717 SANR_RS02240 WP_003035196.1 436283..436948(+) (comFC/cflB) [Streptococcus anginosus C238]
ATGAATTCATGTGTTTTATGTGAAAATCCACTTGATGAAAAGCTGAAATTCTGTGATTTATTGACCTTGAAGAAGCCAAA
AGCAAGGGCTTGTGATGACTGTTTTGAAAAATTTCAGCGCATTTCAGCGCAGCATTGCCCGAAGTGCTATCGTGAAAGGA
CGTGCGAAGTCTGCATGGATTGCCAAGTGTGGATAGAAAAAGGAAAAGAAGTTTACCATAAAAGCTGTTTTGTGTATAAT
GAAGCCATGAAAGACTTCTTCAGTCAATATAAATTTCAAGGAGATTATGCTCTTTATTCTGTATTTACGGAGGTTTTGCA
AAGGGAATTAAAAGCTTACCGTGATTATGCGCTTGTCCCCATTCCTGTAAGTGCTGAAAAGTATCAGACAAGAGGATTTA
ATCAAGTAACAGCTCTTCTTGAGGGTGCAAAGTTGCCATTTAAGGAAGTTTTAGAAAAACATGATACAATTGCTCAATCA
AGCAAGACGAGAAAGGAGCGATTGCAAAGTCAGCAGTGTTTTAAAGTGAAAGACAATATTCAACTTCCACCCAAAATCCT
TTTGATAGATGACATTTATACAACAGGAGCAACCCTACAATTAGCCAAGGAAATTTTAGTGGAAGCAGGAGTGAAAGAAA
TTATGACATTTTCATTGGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SHA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

47.706

98.643

0.471
  comFC/cflB Streptococcus pneumoniae TIGR4

47.248

98.643

0.466
  comFC/cflB Streptococcus mitis NCTC 12261

47.248

98.643

0.466
  comFC/cflB Streptococcus pneumoniae D39

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae Rx1

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae R6

46.789

98.643

0.462
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.362

Multiple sequence alignment