Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   VB13_RS05885 Genome accession   NZ_CP077685
Coordinates   1203107..1203289 (-) Length   60 a.a.
NCBI ID   WP_009880238.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M49 591     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198107..1208289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB13_RS05875 (VB13_06050) rocA 1199541..1200896 (-) 1356 WP_002988979.1 transcriptional regulator RocA -
  VB13_RS05880 (VB13_06055) rlmD 1201561..1202916 (-) 1356 WP_012560848.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  VB13_RS05885 (VB13_06060) prx 1203107..1203289 (-) 183 WP_009880238.1 hypothetical protein Regulator
  VB13_RS05890 (VB13_06065) speA 1203510..1204265 (+) 756 WP_009880239.1 streptococcal pyrogenic exotoxin SpeA -
  VB13_RS05895 (VB13_06070) - 1204387..1205046 (-) 660 WP_009880240.1 hypothetical protein -
  VB13_RS05900 (VB13_06075) - 1205046..1205267 (-) 222 WP_009880241.1 hypothetical protein -
  VB13_RS05905 (VB13_06080) - 1205277..1206050 (-) 774 WP_009880242.1 hypothetical protein -
  VB13_RS05910 (VB13_06085) - 1206061..1206663 (-) 603 WP_009880243.1 hypothetical protein -
  VB13_RS05915 (VB13_06090) - 1206675..1207430 (-) 756 WP_219050256.1 CHAP domain-containing protein -
  VB13_RS05920 (VB13_06095) - 1207432..1207764 (-) 333 WP_009880245.1 phage holin -
  VB13_RS05925 (VB13_06100) - 1207764..1208087 (-) 324 WP_015055952.1 hypothetical protein -
  VB13_RS08715 (VB13_06105) - 1208101..1208223 (-) 123 WP_015055953.1 hypothetical protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 7000.05 Da        Isoelectric Point: 4.3184

>NTDB_id=506882 VB13_RS05885 WP_009880238.1 1203107..1203289(-) (prx) [Streptococcus pyogenes strain M49 591]
MLYIDEFKEAIDKGYILGDTVAIVRKNGKIFDYVLPHEKVRDDEVVTVERVEDVMVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=506882 VB13_RS05885 WP_009880238.1 1203107..1203289(-) (prx) [Streptococcus pyogenes strain M49 591]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGATAAGGGGTATATTTTAGGTGACACAGTAGCGATAGTGCGTAAAAA
CGGAAAGATATTTGATTATGTGTTACCACACGAAAAAGTGAGAGATGATGAAGTTGTGACGGTAGAGAGAGTGGAAGACG
TGATGGTGGAATTAGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

98.333

100

0.983
  prx Streptococcus pyogenes MGAS315

76.667

100

0.767
  prx Streptococcus pyogenes MGAS315

75

100

0.75
  prx Streptococcus pyogenes MGAS315

73.333

100

0.733
  prx Streptococcus pyogenes MGAS8232

73.333

100

0.733
  prx Streptococcus pyogenes MGAS315

66.667

100

0.667
  prx Streptococcus pyogenes MGAS315

76.19

70

0.533