Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   I2437_RS08970 Genome accession   NZ_CP065061
Coordinates   1909307..1910341 (-) Length   344 a.a.
NCBI ID   WP_228274584.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ33     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1904307..1915341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2437_RS08930 (IEMOCGPF_01783) - 1904345..1904935 (+) 591 WP_165628050.1 hypothetical protein -
  I2437_RS08935 (IEMOCGPF_01784) - 1905298..1906497 (-) 1200 WP_012678817.1 acetate kinase -
  I2437_RS08940 (IEMOCGPF_01785) comYH 1906557..1907510 (-) 954 WP_043024962.1 class I SAM-dependent methyltransferase Machinery gene
  I2437_RS08945 (IEMOCGPF_01786) comGG 1907572..1907934 (-) 363 WP_012677238.1 competence type IV pilus minor pilin ComGG -
  I2437_RS08950 (IEMOCGPF_01787) comYF 1907912..1908346 (-) 435 WP_043983927.1 competence type IV pilus minor pilin ComGF Machinery gene
  I2437_RS08955 (IEMOCGPF_01788) comGE 1908333..1908623 (-) 291 WP_014622143.1 competence type IV pilus minor pilin ComGE -
  I2437_RS08960 (IEMOCGPF_01789) comGD 1908580..1909005 (-) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  I2437_RS08965 (IEMOCGPF_01790) comGC/cglC 1908983..1909306 (-) 324 WP_012514782.1 competence type IV pilus major pilin ComGC Machinery gene
  I2437_RS08970 (IEMOCGPF_01791) comYB 1909307..1910341 (-) 1035 WP_228274584.1 competence type IV pilus assembly protein ComGB Machinery gene
  I2437_RS08975 (IEMOCGPF_01792) comGA/cglA 1910274..1911212 (-) 939 WP_165628048.1 competence type IV pilus ATPase ComGA Machinery gene
  I2437_RS08980 (IEMOCGPF_01793) - 1911369..1912037 (-) 669 WP_165628047.1 ATP-binding cassette domain-containing protein -
  I2437_RS08985 (IEMOCGPF_01794) - 1912039..1914042 (-) 2004 WP_111689762.1 DUF1430 domain-containing protein -
  I2437_RS09780 - 1914107..1914307 (-) 201 WP_206157838.1 lactococcin 972 family bacteriocin -
  I2437_RS08995 (IEMOCGPF_01795) - 1914567..1914932 (-) 366 WP_165628045.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39478.75 Da        Isoelectric Point: 9.4455

>NTDB_id=506629 I2437_RS08970 WP_228274584.1 1909307..1910341(-) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
MISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGVLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQGLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLL
VAVIIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=506629 I2437_RS08970 WP_228274584.1 1909307..1910341(-) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCTTTTTACCTATATGCCAGGTCCTG
TAGCAGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGAGTCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGGGCCTGCTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTGAGCCTAATGATTGAATACGGCGACATCAAATCAAAGCTTGGTCGAGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTACTG
GTTGCTGTGATTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.277

98.547

0.535
  comYB Streptococcus mutans UA159

54.277

98.547

0.535
  comYB Streptococcus gordonii str. Challis substr. CH1

52.647

98.837

0.52
  comGB/cglB Streptococcus mitis SK321

48.949

96.802

0.474
  comGB/cglB Streptococcus mitis NCTC 12261

48.802

97.093

0.474
  comGB/cglB Streptococcus pneumoniae Rx1

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae D39

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae R6

48.649

96.802

0.471
  comGB/cglB Streptococcus pneumoniae TIGR4

48.649

96.802

0.471
  comGB Lactococcus lactis subsp. cremoris KW2

46.018

98.547

0.453