Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   I2437_RS08950 Genome accession   NZ_CP065061
Coordinates   1907912..1908346 (-) Length   144 a.a.
NCBI ID   WP_043983927.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ33     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1902912..1913346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2437_RS08930 (IEMOCGPF_01783) - 1904345..1904935 (+) 591 WP_165628050.1 hypothetical protein -
  I2437_RS08935 (IEMOCGPF_01784) - 1905298..1906497 (-) 1200 WP_012678817.1 acetate kinase -
  I2437_RS08940 (IEMOCGPF_01785) comYH 1906557..1907510 (-) 954 WP_043024962.1 class I SAM-dependent methyltransferase Machinery gene
  I2437_RS08945 (IEMOCGPF_01786) comGG 1907572..1907934 (-) 363 WP_012677238.1 competence type IV pilus minor pilin ComGG -
  I2437_RS08950 (IEMOCGPF_01787) comYF 1907912..1908346 (-) 435 WP_043983927.1 competence type IV pilus minor pilin ComGF Machinery gene
  I2437_RS08955 (IEMOCGPF_01788) comGE 1908333..1908623 (-) 291 WP_014622143.1 competence type IV pilus minor pilin ComGE -
  I2437_RS08960 (IEMOCGPF_01789) comGD 1908580..1909005 (-) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  I2437_RS08965 (IEMOCGPF_01790) comGC/cglC 1908983..1909306 (-) 324 WP_012514782.1 competence type IV pilus major pilin ComGC Machinery gene
  I2437_RS08970 (IEMOCGPF_01791) comYB 1909307..1910341 (-) 1035 WP_228274584.1 competence type IV pilus assembly protein ComGB Machinery gene
  I2437_RS08975 (IEMOCGPF_01792) comGA/cglA 1910274..1911212 (-) 939 WP_165628048.1 competence type IV pilus ATPase ComGA Machinery gene
  I2437_RS08980 (IEMOCGPF_01793) - 1911369..1912037 (-) 669 WP_165628047.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16173.67 Da        Isoelectric Point: 10.1988

>NTDB_id=506627 I2437_RS08950 WP_043983927.1 1907912..1908346(-) (comYF) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITTVGQQVTIKLKWQSGLERTFIYAFQEKG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=506627 I2437_RS08950 WP_043983927.1 1907912..1908346(-) (comYF) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
TTGAAAGACAGTAGGCTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTATTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAACAGTAGGTCAGCAGGTGACCATCAAGCTGAAATGGCAAAGCGGGTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

52.083

100

0.521
  comYF Streptococcus mutans UA159

51.389

100

0.514
  comGF/cglF Streptococcus mitis SK321

50.365

95.139

0.479
  comGF/cglF Streptococcus mitis NCTC 12261

49.635

95.139

0.472
  comGF/cglF Streptococcus pneumoniae Rx1

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae D39

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae R6

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae TIGR4

48.175

95.139

0.458
  comGF Lactococcus lactis subsp. cremoris KW2

46.429

97.222

0.451