Detailed information NTG0506340

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: I2433_RS00685
• Genome accession: NZ_CP065056
• Coordinates: 115413..116447 (+)
• Length: 344 a.a.
• NCBI ID: WP_231151265.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ14
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 110413..121447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2433_RS00665 (JDBNIEOD_00129)	-	110813..111178 (+)	366	WP_037580641.1	DUF1033 family protein	-
I2433_RS00670 (JDBNIEOD_00130)	-	111714..113717 (+)	2004	WP_206152298.1	DUF1430 domain-containing protein	-
I2433_RS00675 (JDBNIEOD_00131)	-	113719..114387 (+)	669	WP_206152299.1	ATP-binding cassette domain-containing protein	-
I2433_RS00680 (JDBNIEOD_00132)	comGA/cglA	114542..115480 (+)	939	WP_206152300.1	competence type IV pilus ATPase ComGA	Machinery gene
I2433_RS00685 (JDBNIEOD_00133)	comYB	115413..116447 (+)	1035	WP_231151265.1	competence type IV pilus assembly protein ComGB	Machinery gene
I2433_RS00690 (JDBNIEOD_00134)	comGC/cglC	116448..116771 (+)	324	WP_012677235.1	competence type IV pilus major pilin ComGC	Machinery gene
I2433_RS00695 (JDBNIEOD_00135)	comGD	116749..117174 (+)	426	WP_012514783.1	competence type IV pilus minor pilin ComGD	-
I2433_RS00700 (JDBNIEOD_00136)	comGE	117131..117421 (+)	291	WP_014622143.1	competence type IV pilus minor pilin ComGE	-
I2433_RS00705 (JDBNIEOD_00137)	comYF	117408..117842 (+)	435	WP_206152549.1	competence type IV pilus minor pilin ComGF	Machinery gene
I2433_RS00710 (JDBNIEOD_00138)	comGG	117820..118182 (+)	363	WP_206152302.1	competence type IV pilus minor pilin ComGG	-
I2433_RS00715 (JDBNIEOD_00139)	comYH	118244..119197 (+)	954	WP_037580627.1	class I SAM-dependent methyltransferase	Machinery gene
I2433_RS00720 (JDBNIEOD_00140)	-	119257..120456 (+)	1200	WP_012678817.1	acetate kinase	-
I2433_RS00725 (JDBNIEOD_00141)	-	120824..121438 (-)	615	WP_037580625.1	hypothetical protein	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39447.70 Da
• Isoelectric Point: 9.4455

>NTDB_id=506340 I2433_RS00685 WP_231151265.1 115413..116447(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MISFLQRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLPPVYVTNMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYLIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGALLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQGLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLL
VAVIIVMIYAAILLPIYQHMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=506340 I2433_RS00685 WP_231151265.1 115413..116447(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGTTTTAATTTAACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TCTTACCACCAGTCTATGTTACAAATATGGAAGCAAGCCTATTAAAGGGCAATGGCCTTGCTGATATGCTGGCAGCCTTA
GGCTACTCTGATGCTGTCATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCTGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGATCTTTTTACCTATATGCTAGGTCCTG
TAGCAGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGAGCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTGATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGGGCCTGCTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTGAGCCTAATGATTGAATATGGCGACATCAAATCAAAGCTTGGTCGGGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTACTG
GTTGCTGTGATTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	53.982	98.547	0.532
comYB	Streptococcus mutans UA159	53.982	98.547	0.532
comYB	Streptococcus gordonii str. Challis substr. CH1	52.059	98.837	0.515
comGB/cglB	Streptococcus mitis SK321	48.649	96.802	0.471
comGB/cglB	Streptococcus mitis NCTC 12261	48.503	97.093	0.471
comGB/cglB	Streptococcus pneumoniae Rx1	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae D39	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae R6	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae TIGR4	48.348	96.802	0.468
comGB	Lactococcus lactis subsp. cremoris KW2	45.723	98.547	0.451