Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   I2433_RS00705 Genome accession   NZ_CP065056
Coordinates   117408..117842 (+) Length   144 a.a.
NCBI ID   WP_206152549.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112408..122842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS00675 (JDBNIEOD_00131) - 113719..114387 (+) 669 WP_206152299.1 ATP-binding cassette domain-containing protein -
  I2433_RS00680 (JDBNIEOD_00132) comGA/cglA 114542..115480 (+) 939 WP_206152300.1 competence type IV pilus ATPase ComGA Machinery gene
  I2433_RS00685 (JDBNIEOD_00133) comYB 115413..116447 (+) 1035 WP_231151265.1 competence type IV pilus assembly protein ComGB Machinery gene
  I2433_RS00690 (JDBNIEOD_00134) comGC/cglC 116448..116771 (+) 324 WP_012677235.1 competence type IV pilus major pilin ComGC Machinery gene
  I2433_RS00695 (JDBNIEOD_00135) comGD 116749..117174 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  I2433_RS00700 (JDBNIEOD_00136) comGE 117131..117421 (+) 291 WP_014622143.1 competence type IV pilus minor pilin ComGE -
  I2433_RS00705 (JDBNIEOD_00137) comYF 117408..117842 (+) 435 WP_206152549.1 competence type IV pilus minor pilin ComGF Machinery gene
  I2433_RS00710 (JDBNIEOD_00138) comGG 117820..118182 (+) 363 WP_206152302.1 competence type IV pilus minor pilin ComGG -
  I2433_RS00715 (JDBNIEOD_00139) comYH 118244..119197 (+) 954 WP_037580627.1 class I SAM-dependent methyltransferase Machinery gene
  I2433_RS00720 (JDBNIEOD_00140) - 119257..120456 (+) 1200 WP_012678817.1 acetate kinase -
  I2433_RS00725 (JDBNIEOD_00141) - 120824..121438 (-) 615 WP_037580625.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16225.79 Da        Isoelectric Point: 10.3349

>NTDB_id=506342 I2433_RS00705 WP_206152549.1 117408..117842(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQNNWLLFSQQLRAELSGTTLQGVRNNRLYVEKDK
KALSFGQVKGHDFRKAASNGQGYQPMLFSLSSSQITTVGQQVIIKLKWQSGLERTFIYAFQEKG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=506342 I2433_RS00705 WP_206152549.1 117408..117842(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGAACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCCTACAGGGTGTCCGCAATAATAGGCTATATGTTGAAAAGGACAAG
AAGGCTTTGTCCTTTGGACAGGTCAAGGGCCATGATTTTAGAAAAGCAGCTAGCAATGGTCAAGGCTATCAGCCCATGCT
GTTTAGCTTGTCAAGTAGCCAAATAACAACAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

51.748

99.306

0.514
  comYF Streptococcus mutans UA159

51.049

99.306

0.507
  comGF Lactococcus lactis subsp. cremoris KW2

47.857

97.222

0.465
  comGF/cglF Streptococcus mitis SK321

48.175

95.139

0.458
  comGF/cglF Streptococcus mitis NCTC 12261

47.445

95.139

0.451
  comGF/cglF Streptococcus pneumoniae Rx1

45.985

95.139

0.437
  comGF/cglF Streptococcus pneumoniae D39

45.985

95.139

0.437
  comGF/cglF Streptococcus pneumoniae R6

45.985

95.139

0.437
  comGF/cglF Streptococcus pneumoniae TIGR4

45.985

95.139

0.437