Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   I2433_RS00715 Genome accession   NZ_CP065056
Coordinates   118244..119197 (+) Length   317 a.a.
NCBI ID   WP_037580627.1    Uniprot ID   A0A922NTZ6
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 113244..124197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS00675 (JDBNIEOD_00131) - 113719..114387 (+) 669 WP_206152299.1 ATP-binding cassette domain-containing protein -
  I2433_RS00680 (JDBNIEOD_00132) comGA/cglA 114542..115480 (+) 939 WP_206152300.1 competence type IV pilus ATPase ComGA Machinery gene
  I2433_RS00685 (JDBNIEOD_00133) comYB 115413..116447 (+) 1035 WP_231151265.1 competence type IV pilus assembly protein ComGB Machinery gene
  I2433_RS00690 (JDBNIEOD_00134) comGC/cglC 116448..116771 (+) 324 WP_012677235.1 competence type IV pilus major pilin ComGC Machinery gene
  I2433_RS00695 (JDBNIEOD_00135) comGD 116749..117174 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  I2433_RS00700 (JDBNIEOD_00136) comGE 117131..117421 (+) 291 WP_014622143.1 competence type IV pilus minor pilin ComGE -
  I2433_RS00705 (JDBNIEOD_00137) comYF 117408..117842 (+) 435 WP_206152549.1 competence type IV pilus minor pilin ComGF Machinery gene
  I2433_RS00710 (JDBNIEOD_00138) comGG 117820..118182 (+) 363 WP_206152302.1 competence type IV pilus minor pilin ComGG -
  I2433_RS00715 (JDBNIEOD_00139) comYH 118244..119197 (+) 954 WP_037580627.1 class I SAM-dependent methyltransferase Machinery gene
  I2433_RS00720 (JDBNIEOD_00140) - 119257..120456 (+) 1200 WP_012678817.1 acetate kinase -
  I2433_RS00725 (JDBNIEOD_00141) - 120824..121438 (-) 615 WP_037580625.1 hypothetical protein -
  I2433_RS00730 (JDBNIEOD_00142) - 121961..124003 (+) 2043 WP_206152303.1 BglG family transcription antiterminator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35741.74 Da        Isoelectric Point: 4.8471

>NTDB_id=506343 I2433_RS00715 WP_037580627.1 118244..119197(+) (comYH) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MNFEKIEQAYELILENSQLIENDLKTHIYDAIVEQNSFYLGAQGASPQVAKNIETLKALQLTKEEWRQAYQFVLIKAGKT
EPLQANHQFTPDAIGFIMLYILETLSSQESLDVLEIGSGTGNLAHTILNHSHQAIHYLGIELDDLLIDLSASIAEIMGSS
AQFIQEDAVRPQLLKESDMIISDLPVGFYPNDDIASRYQVASSDEHTYAHHLLMEQALKYLKKDGFAIFLAPVNLLSSPQ
SHLLKQWLKGYAQVAALITLPEAVFGNPANAKSIIVLCKQSNRFAETFVYPIRDLKSVDNVRDFMENFKNWKRDNVI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=506343 I2433_RS00715 WP_037580627.1 118244..119197(+) (comYH) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGAATTTTGAAAAGATTGAACAAGCCTATGAGCTTATATTAGAAAATAGCCAGCTGATTGAAAATGATCTAAAAACGCA
TATCTATGATGCTATTGTTGAGCAGAATTCTTTTTATCTGGGAGCCCAAGGAGCAAGTCCTCAGGTTGCTAAAAATATTG
AGACGTTGAAGGCCTTGCAGTTAACCAAGGAGGAGTGGCGCCAGGCTTATCAGTTTGTTTTGATCAAGGCTGGGAAAACA
GAGCCATTACAGGCTAACCACCAATTTACCCCAGACGCGATCGGCTTTATCATGCTTTATATTTTGGAGACCTTGAGCTC
ACAAGAGTCACTTGATGTGCTTGAGATTGGGAGTGGGACAGGCAATCTGGCTCACACCATTTTAAACCATTCACACCAAG
CGATTCATTATTTAGGCATTGAGCTTGATGATTTATTAATTGATCTATCCGCTAGTATTGCTGAAATCATGGGGTCATCA
GCTCAGTTTATTCAAGAGGATGCTGTCAGACCTCAGCTGTTAAAGGAAAGTGATATGATCATTAGTGATTTGCCAGTTGG
CTTTTATCCTAACGATGATATTGCCAGCAGGTATCAGGTGGCTAGCTCAGATGAGCATACCTATGCCCATCATTTACTGA
TGGAGCAGGCCTTAAAGTACCTGAAAAAAGATGGCTTTGCTATTTTCTTAGCACCGGTAAATCTTTTGAGCAGCCCACAA
AGTCACCTCTTAAAACAATGGCTGAAGGGCTATGCTCAGGTTGCGGCCTTGATTACTTTGCCTGAGGCTGTGTTTGGAAA
TCCAGCTAATGCAAAATCGATTATTGTTCTTTGTAAGCAATCGAATCGCTTTGCAGAAACCTTTGTTTACCCCATTAGGG
ATTTGAAATCTGTTGATAATGTTCGTGATTTTATGGAAAACTTCAAAAATTGGAAACGGGATAATGTTATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

62.658

99.685

0.625
  comYH Streptococcus mutans UA140

62.658

99.685

0.625