Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IVB58_RS02905 Genome accession   NZ_CP065051
Coordinates   620003..620413 (+) Length   136 a.a.
NCBI ID   WP_025464588.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 615003..625413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS02890 (IVB58_02880) - 615992..618298 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IVB58_RS02895 (IVB58_02885) - 618343..619116 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  IVB58_RS02900 (IVB58_02890) mazG 619228..620034 (+) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  IVB58_RS02905 (IVB58_02895) comEA 620003..620413 (+) 411 WP_025464588.1 ComEA family DNA-binding protein Machinery gene
  IVB58_RS02910 (IVB58_02900) pcnB 620538..622001 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  IVB58_RS02915 (IVB58_02905) folK 621998..622480 (+) 483 WP_000219212.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IVB58_RS02920 (IVB58_02910) panB 622526..623335 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IVB58_RS02925 (IVB58_02915) panC 623339..624187 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  IVB58_RS02930 (IVB58_02920) rapZ 624210..625061 (+) 852 WP_000821671.1 RNase adapter RapZ -
  IVB58_RS02935 (IVB58_02925) - 625058..625327 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.93 Da        Isoelectric Point: 10.3828

>NTDB_id=506219 IVB58_RS02905 WP_025464588.1 620003..620413(+) (comEA) [Acinetobacter baumannii strain 2016GDAB1]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=506219 IVB58_RS02905 WP_025464588.1 620003..620413(+) (comEA) [Acinetobacter baumannii strain 2016GDAB1]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

98.529

100

0.985
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412