Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   KQ254_RS05985 Genome accession   NZ_CP076807
Coordinates   1241861..1242376 (-) Length   171 a.a.
NCBI ID   WP_145755981.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1236861..1247376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS05960 (KQ254_05940) - 1237407..1239050 (+) 1644 WP_000281764.1 nitrite/sulfite reductase -
  KQ254_RS05965 (KQ254_05945) - 1239043..1239528 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  KQ254_RS05970 (KQ254_05950) - 1239611..1239964 (+) 354 WP_145755979.1 SMR family transporter -
  KQ254_RS05975 (KQ254_05955) - 1240007..1240450 (-) 444 WP_145755980.1 VOC family protein -
  KQ254_RS05980 (KQ254_05960) - 1240577..1241752 (-) 1176 WP_096640438.1 thiolase family protein -
  KQ254_RS05985 (KQ254_05965) fimT 1241861..1242376 (-) 516 WP_145755981.1 GspH/FimT family pseudopilin Machinery gene
  KQ254_RS05990 (KQ254_05970) omp38 1242757..1243827 (+) 1071 WP_253535003.1 outer membrane protein Omp38 -
  KQ254_RS05995 (KQ254_05975) - 1243952..1244095 (-) 144 WP_162138624.1 hypothetical protein -
  KQ254_RS06000 (KQ254_05980) - 1244114..1244788 (-) 675 Protein_1147 RtcB family protein -
  KQ254_RS06005 (KQ254_05985) - 1245297..1245536 (+) 240 WP_001353740.1 BrxA family protein -
  KQ254_RS06010 (KQ254_05990) intI2 1245724..1246701 (-) 978 Protein_1149 class 2 integron integrase IntI2 -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19632.90 Da        Isoelectric Point: 9.1498

>NTDB_id=504913 KQ254_RS05985 WP_145755981.1 1241861..1242376(-) (fimT) [Acinetobacter baumannii strain UC20804]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSNQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=504913 KQ254_RS05985 WP_145755981.1 1241861..1242376(-) (fimT) [Acinetobacter baumannii strain UC20804]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTAATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421