Detailed information NTG0504840

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: IZG20_RS13740
• Genome accession: NZ_CP064794
• Coordinates: 3022138..3023397 (+)
• Length: 419 a.a.
• NCBI ID: WP_048484085.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzicola strain HGA4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3017138..3028397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IZG20_RS13720	-	3017498..3019024 (-)	1527	WP_048483580.1	membrane protein	-
IZG20_RS13725	-	3018994..3019623 (-)	630	WP_229690097.1	hypothetical protein	-
IZG20_RS13730	-	3019634..3021223 (-)	1590	WP_014504322.1	phosphoethanolamine transferase	-
IZG20_RS13735	pilA2	3021359..3021784 (-)	426	WP_047340102.1	pilin	Machinery gene
IZG20_RS13740	pilC	3022138..3023397 (+)	1260	WP_048484085.1	type II secretion system F family protein	Machinery gene
IZG20_RS13745	-	3023404..3024267 (+)	864	WP_014504325.1	A24 family peptidase	-
IZG20_RS13750	coaE	3024281..3024889 (+)	609	WP_014504326.1	dephospho-CoA kinase	-
IZG20_RS13755	-	3024953..3025988 (+)	1036	WP_229690098.1	IS5 family transposase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46108.65 Da
• Isoelectric Point: 10.2301

>NTDB_id=504840 IZG20_RS13740 WP_048484085.1 3022138..3023397(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain HGA4]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETIATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=504840 IZG20_RS13740 WP_048484085.1 3022138..3023397(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain HGA4]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGAAACACCAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAACTGCGCCGTC
AGGGTATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTATCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGATCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGCTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTAAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGATGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	52.463	96.897	0.508
pilC	Pseudomonas stutzeri DSM 10701	53.535	94.511	0.506
pilC	Acinetobacter baylyi ADP1	50.37	96.659	0.487
pilC	Acinetobacter baumannii D1279779	50.123	96.659	0.484
pilG	Neisseria gonorrhoeae MS11	43.358	95.227	0.413
pilG	Neisseria meningitidis 44/76-A	42.75	95.465	0.408
pilC	Vibrio cholerae strain A1552	40.25	95.465	0.384
pilC	Vibrio campbellii strain DS40M4	38.75	95.465	0.37