Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Azoinq_RS09035 Genome accession   NZ_CP064782
Coordinates   1964491..1965480 (-) Length   329 a.a.
NCBI ID   WP_216129838.1    Uniprot ID   A0A975XTR5
Organism   Azospira inquinata strain Azo-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1959491..1970480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Azoinq_RS09015 (Azoinq_09005) - 1960125..1960673 (+) 549 WP_216129845.1 chemotaxis protein CheW -
  Azoinq_RS09020 (Azoinq_09010) - 1960702..1962744 (+) 2043 WP_216129843.1 bifunctional diguanylate cyclase/phosphodiesterase -
  Azoinq_RS09025 (Azoinq_09015) ftsX 1962827..1963732 (-) 906 WP_216129841.1 permease-like cell division protein FtsX -
  Azoinq_RS09030 (Azoinq_09020) - 1963732..1964400 (-) 669 WP_216129840.1 cell division ATP-binding protein FtsE -
  Azoinq_RS09035 (Azoinq_09025) pilA 1964491..1965480 (-) 990 WP_216129838.1 signal recognition particle-docking protein FtsY Machinery gene
  Azoinq_RS09040 (Azoinq_09030) - 1965647..1967008 (+) 1362 WP_232368609.1 pitrilysin family protein -
  Azoinq_RS09045 (Azoinq_09035) - 1967039..1968349 (+) 1311 WP_216129834.1 pitrilysin family protein -
  Azoinq_RS09050 (Azoinq_09040) rsmD 1968421..1968960 (+) 540 WP_408627115.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Azoinq_RS09055 (Azoinq_09045) coaD 1968950..1969432 (+) 483 WP_408627063.1 pantetheine-phosphate adenylyltransferase -
  Azoinq_RS09060 (Azoinq_09050) - 1969464..1969721 (+) 258 WP_216129830.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 34902.19 Da        Isoelectric Point: 6.5069

>NTDB_id=504729 Azoinq_RS09035 WP_216129838.1 1964491..1965480(-) (pilA) [Azospira inquinata strain Azo-3]
MFGFLKKSATDTSTATPEAGADAAPAALSWRERLFKGLARTRAQLGGKLKAVFARGKVDEELLEELETLLLTSDVGMEAT
EHLLNALKARAKQDKLDTPEAIQQALGDCLAELLAPLEQPLDISGHRPFVIMIAGVNGAGKTTSIGKLAKYFQSQGKSVL
LAAGDTFRAAAREQLQTWGERNNVTVIAQESGDPAAVVFDAIAAAKARGIDVVLADTAGRLPTQLHLMEEIAKVRRVIQK
ADPTGPHEVILVLDANIGQNALAQVKAFDKSLNVTGLVLTKLDGTAKGGVIAAIARQCPKPIRFIGVGEGIDDLRPFAVR
DFVDALLGD

Nucleotide


Download         Length: 990 bp        

>NTDB_id=504729 Azoinq_RS09035 WP_216129838.1 1964491..1965480(-) (pilA) [Azospira inquinata strain Azo-3]
ATGTTTGGTTTCCTGAAAAAATCTGCCACCGACACTTCCACCGCCACGCCGGAGGCCGGAGCGGACGCCGCCCCCGCCGC
CCTTTCCTGGCGGGAGCGCCTTTTCAAGGGGCTGGCCCGCACCCGGGCCCAGCTGGGGGGCAAGCTCAAAGCCGTCTTCG
CCCGGGGCAAGGTGGATGAGGAATTGTTGGAAGAACTGGAAACTCTCCTGCTCACCAGCGATGTGGGCATGGAAGCCACG
GAGCACCTGCTCAACGCTCTCAAAGCCCGGGCCAAGCAGGACAAGCTGGATACGCCGGAAGCCATCCAGCAGGCCCTGGG
GGACTGTCTGGCCGAACTGCTAGCGCCCCTGGAACAGCCCCTGGACATTTCCGGCCACCGCCCTTTCGTAATCATGATCG
CCGGGGTCAACGGGGCGGGCAAAACCACCTCCATCGGCAAGCTGGCCAAGTATTTCCAGAGCCAGGGCAAGAGCGTACTC
CTGGCCGCCGGGGACACCTTCCGGGCCGCCGCCCGGGAACAGCTCCAGACCTGGGGCGAACGGAACAATGTGACGGTGAT
CGCCCAGGAAAGCGGCGATCCGGCCGCCGTAGTATTCGACGCCATCGCCGCCGCCAAGGCCCGGGGCATCGACGTGGTGC
TGGCGGACACCGCCGGGCGCCTGCCCACCCAGCTGCACCTCATGGAAGAAATCGCCAAGGTGCGCCGGGTCATTCAGAAA
GCGGACCCCACCGGCCCCCACGAGGTGATCCTGGTGCTGGACGCCAATATCGGCCAGAACGCCCTGGCCCAGGTGAAAGC
CTTCGATAAGTCCCTCAACGTCACCGGCCTGGTGCTGACCAAGCTGGACGGCACCGCCAAGGGCGGGGTCATCGCCGCCA
TTGCCCGCCAGTGCCCCAAGCCCATCCGCTTTATCGGCGTGGGGGAAGGCATCGACGATCTGCGCCCCTTCGCGGTACGG
GACTTTGTGGATGCCCTGCTGGGCGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(128-328)

SRP54-type protein, helical bundle domain (SRP54_N)

(45-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

64.952

94.529

0.614