Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IR208_RS16845 Genome accession   NZ_CP064767
Coordinates   3545756..3546256 (-) Length   166 a.a.
NCBI ID   WP_046721068.1    Uniprot ID   A0A150KC08
Organism   Heyndrickxia coagulans strain BC01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3540756..3551256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR208_RS16825 (IR208_16825) rplI 3541925..3542368 (-) 444 WP_014096625.1 50S ribosomal protein L9 -
  IR208_RS16830 (IR208_16830) - 3542365..3544338 (-) 1974 WP_035188759.1 DHH family phosphoesterase -
  IR208_RS16835 (IR208_16835) - 3544374..3545315 (-) 942 WP_152598475.1 YybS family protein -
  IR208_RS16840 (IR208_16840) rpsR 3545472..3545711 (-) 240 WP_013860883.1 30S ribosomal protein S18 -
  IR208_RS16845 (IR208_16845) ssbA 3545756..3546256 (-) 501 WP_046721068.1 single-stranded DNA-binding protein Machinery gene
  IR208_RS16850 (IR208_16850) rpsF 3546318..3546605 (-) 288 WP_014096621.1 30S ribosomal protein S6 -
  IR208_RS16855 (IR208_16855) ribE 3546859..3547329 (-) 471 WP_071452204.1 6,7-dimethyl-8-ribityllumazine synthase -
  IR208_RS16860 (IR208_16860) - 3547341..3548534 (-) 1194 WP_071452205.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  IR208_RS16865 (IR208_16865) - 3548552..3549199 (-) 648 WP_014096618.1 riboflavin synthase -
  IR208_RS16870 (IR208_16870) ribD 3549180..3550292 (-) 1113 WP_179234842.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18695.37 Da        Isoelectric Point: 4.6437

>NTDB_id=504601 IR208_RS16845 WP_046721068.1 3545756..3546256(-) (ssbA) [Heyndrickxia coagulans strain BC01]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
NYEAQDGRRVYVTEVVADSVQFLEPRSANQERGSSQNYGNNQGSPFPGYNQNQNQYQRNQNDSKPDEDPFSNDGQPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=504601 IR208_RS16845 WP_046721068.1 3545756..3546256(-) (ssbA) [Heyndrickxia coagulans strain BC01]
ATGTTGAACCGTGTTGTTCTCGTAGGCAGGCTGACAAAAGATCCCGATTTGCGCTATACGCCGAGCGGAGTAGCGGTTGC
TACTTTTACCCTGGCTGTAAACCGTACGTTTACAAACCAGCAGGGGGAAAGGGAAGCGGATTTCATCAATTGTGTTGTTT
GGAGAAAGCAGGCTGAAAATGTGGCCAACTACTTAAAAAAAGGAAGTCTGGCAGGCGTAGACGGCCGGATTCAGACACGC
AACTACGAAGCTCAGGACGGCCGGCGCGTGTATGTCACAGAGGTCGTGGCAGACAGCGTCCAGTTTCTTGAACCGAGAAG
TGCGAATCAGGAACGCGGCAGCAGCCAGAATTACGGGAACAACCAAGGGAGTCCTTTCCCGGGGTACAATCAGAATCAAA
ATCAGTATCAGCGTAATCAAAATGATTCAAAGCCTGATGAAGATCCATTCTCTAATGATGGACAACCGATTGACATCTCT
GATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150KC08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.886

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

61.988

100

0.639
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.038

63.855

0.422
  ssb Neisseria meningitidis MC58

34.973

100

0.386
  ssb Neisseria gonorrhoeae MS11

34.973

100

0.386
  ssb Glaesserella parasuis strain SC1401

35.593

100

0.38
  ssb Vibrio cholerae strain A1552

34.463

100

0.367