Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KRG72_RS03030 Genome accession   NZ_CP076703
Coordinates   575939..576610 (+) Length   223 a.a.
NCBI ID   WP_258255825.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 570939..581610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS03010 (KRG72_03010) - 572353..573930 (+) 1578 WP_258255820.1 DEAD/DEAH box helicase -
  KRG72_RS03015 (KRG72_03015) - 573970..574245 (-) 276 WP_258255821.1 GIY-YIG nuclease family protein -
  KRG72_RS03020 (KRG72_03020) - 574220..574981 (-) 762 WP_258255822.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KRG72_RS03025 (KRG72_03025) - 575098..575844 (+) 747 WP_074481912.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  KRG72_RS03030 (KRG72_03030) comEA 575939..576610 (+) 672 WP_258255825.1 helix-hairpin-helix domain-containing protein Machinery gene
  KRG72_RS03035 (KRG72_03035) comEC/celB 576600..578834 (+) 2235 WP_258256245.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KRG72_RS03040 (KRG72_03040) holA 578899..579936 (+) 1038 WP_258255826.1 DNA polymerase III subunit delta -
  KRG72_RS03045 (KRG72_03045) sodA 580031..580642 (+) 612 WP_258255827.1 superoxide dismutase SodA -
  KRG72_RS03050 (KRG72_03050) - 580747..581472 (+) 726 WP_258255828.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23890.90 Da        Isoelectric Point: 4.7495

>NTDB_id=504044 KRG72_RS03030 WP_258255825.1 575939..576610(+) (comEA) [Streptococcus equinus strain S1]
MIEEMKERLLEHKTVAAVLGTVLVMLVAFFAWSSMTRPKTQLQSDLPALSSSIQASSSFEPEKTKTMTSHFQDDSGKIFI
DIKGAVKNEGVYELSSGSRVTDLVKKAGGFTDDADQKSVNLAEKLADEAVVYVARIGEGVTPATTPSQAKNGTQEGASSD
KINLNTATLEQLQTISGIGAKRAQDIIDYREANGGFSSVDDLKNVSGIGEKTLEKLKAEVTVD

Nucleotide


Download         Length: 672 bp        

>NTDB_id=504044 KRG72_RS03030 WP_258255825.1 575939..576610(+) (comEA) [Streptococcus equinus strain S1]
ATGATTGAAGAGATGAAAGAAAGACTTTTGGAACATAAGACGGTAGCAGCGGTTTTAGGAACAGTGCTTGTTATGCTTGT
GGCATTCTTTGCTTGGTCTAGTATGACTAGACCGAAAACACAGCTACAGAGTGATTTACCTGCACTTTCTAGTAGTATCC
AAGCAAGTTCAAGTTTTGAACCAGAAAAGACAAAGACTATGACGTCTCATTTTCAAGATGACTCTGGCAAGATTTTTATC
GATATCAAGGGTGCGGTTAAAAATGAAGGTGTTTATGAATTATCATCAGGCAGCCGTGTTACGGATTTGGTCAAAAAAGC
TGGTGGCTTTACAGATGATGCGGATCAGAAATCGGTAAATTTAGCTGAGAAATTAGCTGATGAAGCGGTTGTCTATGTTG
CAAGGATTGGTGAAGGCGTTACGCCAGCAACGACCCCTTCACAAGCAAAGAATGGCACGCAAGAAGGTGCAAGTTCAGAT
AAAATCAACCTTAATACAGCAACGTTAGAACAACTTCAAACCATTTCAGGAATTGGTGCCAAACGTGCTCAAGATATCAT
CGATTACCGTGAGGCAAATGGTGGTTTTTCATCAGTTGATGATTTGAAAAATGTGTCAGGAATTGGTGAAAAGACTTTGG
AGAAACTAAAAGCTGAGGTGACTGTTGATTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(159-221)

SLBB domain (SLBB)

(80-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

46.32

100

0.48
  comEA/celA/cilE Streptococcus mitis SK321

46.429

100

0.466
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

45.333

100

0.457
  comEA/celA/cilE Streptococcus mitis NCTC 12261

44.889

100

0.453
  comEA/celA/cilE Streptococcus pneumoniae Rx1

44.444

100

0.448
  comEA/celA/cilE Streptococcus pneumoniae D39

44.444

100

0.448
  comEA/celA/cilE Streptococcus pneumoniae R6

44.444

100

0.448
  comEA Bacillus subtilis subsp. subtilis str. 168

39.171

97.309

0.381
  comEA Latilactobacillus sakei subsp. sakei 23K

34.711

100

0.377