Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KNZ81_RS02455 Genome accession   NZ_CP076385
Coordinates   653757..654392 (-) Length   211 a.a.
NCBI ID   WP_023415953.1    Uniprot ID   -
Organism   Streptomyces sp. G11C(2021)     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 648757..659392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNZ81_RS02425 (KNZ81_02480) - 648861..650072 (+) 1212 WP_215221293.1 CaiB/BaiF CoA-transferase family protein -
  KNZ81_RS02435 (KNZ81_02485) - 650591..651145 (-) 555 WP_008408795.1 type 1 glutamine amidotransferase domain-containing protein -
  KNZ81_RS02440 (KNZ81_02490) - 651628..652491 (+) 864 WP_023415951.1 family 16 glycosylhydrolase -
  KNZ81_RS02445 (KNZ81_02495) - 652664..653104 (+) 441 WP_234025317.1 helix-turn-helix domain-containing protein -
  KNZ81_RS02450 (KNZ81_02500) clpP 653153..653755 (-) 603 WP_003952116.1 ClpP family protease Regulator
  KNZ81_RS02455 (KNZ81_02505) clpP 653757..654392 (-) 636 WP_023415953.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KNZ81_RS02460 (KNZ81_02510) - 654533..655171 (-) 639 WP_023415954.1 hypothetical protein -
  KNZ81_RS02465 (KNZ81_02515) - 655227..655901 (-) 675 WP_124273097.1 type III effector protein -
  KNZ81_RS02470 (KNZ81_02520) - 656052..656483 (+) 432 WP_023421211.1 Hsp20/alpha crystallin family protein -
  KNZ81_RS02475 (KNZ81_02525) - 656644..657111 (+) 468 WP_370466102.1 DUF2267 domain-containing protein -
  KNZ81_RS02480 (KNZ81_02530) - 657339..657761 (-) 423 WP_023421213.1 arsenate reductase ArsC -
  KNZ81_RS02485 (KNZ81_02535) - 657857..658165 (+) 309 WP_023421214.1 helix-turn-helix transcriptional regulator -
  KNZ81_RS02490 (KNZ81_02540) arsB 658162..659274 (+) 1113 WP_033952770.1 ACR3 family arsenite efflux transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22729.63 Da        Isoelectric Point: 5.3006

>NTDB_id=502285 KNZ81_RS02455 WP_023415953.1 653757..654392(-) (clpP) [Streptomyces sp. G11C(2021)]
MAPSHPAWSAADAEAAPTRYDDQLAGQLLTQRIVLLGTQVDETSANRVCAQLLLLSAEDPRTDISLYINSPGGSVTAGLA
IYDTMRLIPNDVSTLAMGFAASMGQFLLTVGTAGKRFALPNARIMMHQPSAGIGGSAADIAIQAENLEFTKRAIERLTAE
HTGRSEAEISRDSDRDRWFTAEQAKEYGMVDRVVHTLDDVRPSGTRRKAGI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=502285 KNZ81_RS02455 WP_023415953.1 653757..654392(-) (clpP) [Streptomyces sp. G11C(2021)]
ATGGCGCCCTCGCACCCCGCCTGGTCGGCCGCTGACGCGGAGGCCGCACCCACCCGCTACGACGACCAGCTCGCCGGACA
ACTGCTCACCCAGCGCATCGTCCTGCTCGGCACCCAGGTCGACGAGACCTCTGCCAACCGGGTCTGCGCCCAGCTGCTCC
TGCTGTCGGCCGAGGACCCGCGCACCGACATCAGCCTGTACATCAACAGCCCCGGCGGTTCGGTCACCGCCGGGCTCGCC
ATCTACGACACGATGCGGCTGATCCCCAACGACGTGTCGACGCTCGCCATGGGCTTCGCCGCCAGCATGGGCCAGTTCCT
GCTGACGGTGGGGACGGCCGGCAAGCGGTTCGCGCTGCCCAACGCGCGCATCATGATGCACCAGCCGTCGGCGGGCATCG
GCGGATCGGCCGCCGACATCGCCATCCAGGCCGAGAACCTGGAGTTCACCAAGCGCGCCATCGAGCGGCTGACGGCCGAG
CACACCGGCCGCAGTGAGGCCGAGATCAGCCGGGACAGCGACCGCGACCGCTGGTTCACCGCCGAACAGGCCAAGGAGTA
CGGGATGGTGGACCGTGTCGTCCACACCCTGGACGACGTCCGCCCCTCCGGCACGCGGCGGAAGGCGGGGATCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(23-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

85.308

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.864

83.412

0.408
  clpP Streptococcus pneumoniae D39

46.893

83.886

0.393
  clpP Streptococcus pneumoniae R6

46.893

83.886

0.393
  clpP Streptococcus pneumoniae TIGR4

46.893

83.886

0.393
  clpP Streptococcus pneumoniae Rx1

46.893

83.886

0.393
  clpP Streptococcus pyogenes JRS4

46.893

83.886

0.393
  clpP Streptococcus pyogenes MGAS315

46.893

83.886

0.393
  clpP Lactococcus lactis subsp. cremoris KW2

46.369

84.834

0.393
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.81

84.834

0.389
  clpP Streptococcus mutans UA159

44.693

84.834

0.379
  clpP Streptococcus thermophilus LMD-9

45.198

83.886

0.379
  clpP Streptococcus thermophilus LMG 18311

45.198

83.886

0.379