Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IUJ40_RS03775 | Genome accession | NZ_CP064389 |
| Coordinates | 746543..747013 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934764.1 | Uniprot ID | A0A9P4DKA4 |
| Organism | Staphylococcus aureus strain PartE-Saureus-RM8376 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 716150..778681 | 746543..747013 | within | 0 |
Gene organization within MGE regions
Location: 716150..778681
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ40_RS03575 (IUJ40_03575) | - | 716150..716776 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| IUJ40_RS03580 (IUJ40_03580) | - | 716973..718232 (+) | 1260 | WP_000120305.1 | SdrH family protein | - |
| IUJ40_RS03585 (IUJ40_03585) | mroQ | 718257..719000 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| IUJ40_RS03590 (IUJ40_03590) | groES | 719175..719459 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| IUJ40_RS03595 (IUJ40_03595) | groL | 719535..721151 (+) | 1617 | WP_000240645.1 | chaperonin GroEL | - |
| IUJ40_RS03600 (IUJ40_03600) | - | 721246..721792 (-) | 547 | Protein_703 | site-specific integrase | - |
| IUJ40_RS03605 (IUJ40_03605) | - | 721853..722065 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| IUJ40_RS03610 (IUJ40_03610) | - | 722062..722652 (+) | 591 | WP_001293058.1 | terminase small subunit | - |
| IUJ40_RS03615 (IUJ40_03615) | - | 722970..723407 (+) | 438 | WP_011447041.1 | hypothetical protein | - |
| IUJ40_RS03620 (IUJ40_03620) | - | 723602..724774 (-) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| IUJ40_RS03625 (IUJ40_03625) | - | 724830..725288 (+) | 459 | WP_065252084.1 | GNAT family N-acetyltransferase | - |
| IUJ40_RS03630 (IUJ40_03630) | - | 726141..727448 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| IUJ40_RS03635 (IUJ40_03635) | - | 727609..728520 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| IUJ40_RS03640 (IUJ40_03640) | - | 728582..729427 (+) | 846 | WP_111187741.1 | class I SAM-dependent methyltransferase | - |
| IUJ40_RS03645 (IUJ40_03645) | - | 729799..731022 (-) | 1224 | WP_000206638.1 | ArgE/DapE family deacylase | - |
| IUJ40_RS03650 (IUJ40_03650) | lukH | 731457..732512 (+) | 1056 | WP_000791407.1 | bi-component leukocidin LukGH subunit H | - |
| IUJ40_RS03655 (IUJ40_03655) | lukG | 732534..733547 (+) | 1014 | WP_023487212.1 | bi-component leukocidin LukGH subunit G | - |
| IUJ40_RS03660 (IUJ40_03660) | sph | 733785..734609 (-) | 825 | Protein_715 | sphingomyelin phosphodiesterase | - |
| IUJ40_RS03665 (IUJ40_03665) | - | 734666..735703 (-) | 1038 | WP_065252081.1 | site-specific integrase | - |
| IUJ40_RS03670 (IUJ40_03670) | - | 735762..736226 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| IUJ40_RS03675 (IUJ40_03675) | - | 736326..736508 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| IUJ40_RS03680 (IUJ40_03680) | - | 736712..737053 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IUJ40_RS03685 (IUJ40_03685) | - | 737059..737991 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IUJ40_RS03690 (IUJ40_03690) | - | 738007..738720 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IUJ40_RS03695 (IUJ40_03695) | - | 738683..738856 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| IUJ40_RS03700 (IUJ40_03700) | - | 738853..739116 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IUJ40_RS03705 (IUJ40_03705) | - | 739132..739347 (+) | 216 | WP_001025874.1 | MW1434 family type I TA system toxin | - |
| IUJ40_RS03710 (IUJ40_03710) | - | 739336..739665 (-) | 330 | WP_065252080.1 | hypothetical protein | - |
| IUJ40_RS03715 (IUJ40_03715) | - | 739716..740468 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| IUJ40_RS03720 (IUJ40_03720) | - | 740484..740681 (+) | 198 | WP_001148855.1 | hypothetical protein | - |
| IUJ40_RS03725 (IUJ40_03725) | - | 740712..740852 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| IUJ40_RS03730 (IUJ40_03730) | - | 740867..741499 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| IUJ40_RS03735 (IUJ40_03735) | - | 741558..741878 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| IUJ40_RS03740 (IUJ40_03740) | - | 741875..742036 (+) | 162 | WP_000066017.1 | DUF1270 domain-containing protein | - |
| IUJ40_RS03745 (IUJ40_03745) | - | 742131..742457 (+) | 327 | WP_000165375.1 | DUF2482 family protein | - |
| IUJ40_RS03750 (IUJ40_03750) | - | 742438..742698 (+) | 261 | WP_000291503.1 | DUF1108 family protein | - |
| IUJ40_RS03755 (IUJ40_03755) | - | 742707..742970 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IUJ40_RS03760 (IUJ40_03760) | - | 742979..744922 (+) | 1944 | WP_000700577.1 | AAA family ATPase | - |
| IUJ40_RS03765 (IUJ40_03765) | - | 744924..745844 (+) | 921 | WP_000138472.1 | recombinase RecT | - |
| IUJ40_RS03770 (IUJ40_03770) | - | 745925..746542 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| IUJ40_RS03775 (IUJ40_03775) | ssbA | 746543..747013 (+) | 471 | WP_000934764.1 | single-stranded DNA-binding protein | Machinery gene |
| IUJ40_RS03780 (IUJ40_03780) | - | 747043..747916 (+) | 874 | Protein_739 | DnaD domain protein | - |
| IUJ40_RS03785 (IUJ40_03785) | - | 747923..748141 (+) | 219 | WP_000338531.1 | hypothetical protein | - |
| IUJ40_RS03790 (IUJ40_03790) | - | 748150..748459 (+) | 310 | Protein_741 | RusA family crossover junction endodeoxyribonuclease | - |
| IUJ40_RS03795 (IUJ40_03795) | - | 748472..748840 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| IUJ40_RS03800 (IUJ40_03800) | - | 748844..749086 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| IUJ40_RS03805 (IUJ40_03805) | - | 749101..749265 (+) | 165 | WP_000990744.1 | hypothetical protein | - |
| IUJ40_RS03810 (IUJ40_03810) | - | 749258..749509 (+) | 252 | WP_001065091.1 | DUF1024 family protein | - |
| IUJ40_RS03815 (IUJ40_03815) | - | 749499..749681 (+) | 183 | WP_000028422.1 | hypothetical protein | - |
| IUJ40_RS03820 (IUJ40_03820) | - | 749674..750216 (+) | 543 | WP_000185659.1 | dUTP diphosphatase | - |
| IUJ40_RS03825 (IUJ40_03825) | - | 750253..750459 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IUJ40_RS03830 (IUJ40_03830) | - | 750456..750842 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| IUJ40_RS03835 (IUJ40_03835) | rinB | 750839..750988 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IUJ40_RS03840 (IUJ40_03840) | - | 750988..751188 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| IUJ40_RS03845 (IUJ40_03845) | - | 751216..751632 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IUJ40_RS03850 (IUJ40_03850) | - | 751864..752163 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
| IUJ40_RS03855 (IUJ40_03855) | - | 752293..752637 (+) | 345 | WP_000402904.1 | hypothetical protein | - |
| IUJ40_RS03860 (IUJ40_03860) | - | 752634..754295 (+) | 1662 | WP_000625088.1 | terminase large subunit | - |
| IUJ40_RS03865 (IUJ40_03865) | - | 754311..755498 (+) | 1188 | WP_000025274.1 | phage portal protein | - |
| IUJ40_RS03870 (IUJ40_03870) | - | 755482..756219 (+) | 738 | WP_065252079.1 | head maturation protease, ClpP-related | - |
| IUJ40_RS03875 (IUJ40_03875) | - | 756243..757388 (+) | 1146 | WP_000154559.1 | phage major capsid protein | - |
| IUJ40_RS03880 (IUJ40_03880) | - | 757408..757692 (+) | 285 | WP_000238236.1 | hypothetical protein | - |
| IUJ40_RS03885 (IUJ40_03885) | - | 757682..757966 (+) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| IUJ40_RS03890 (IUJ40_03890) | - | 757950..758312 (+) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| IUJ40_RS03895 (IUJ40_03895) | - | 758309..758713 (+) | 405 | WP_000114226.1 | HK97 gp10 family phage protein | - |
| IUJ40_RS03900 (IUJ40_03900) | - | 758710..759117 (+) | 408 | WP_000565498.1 | hypothetical protein | - |
| IUJ40_RS03905 (IUJ40_03905) | - | 759118..759762 (+) | 645 | WP_000268735.1 | major tail protein | - |
| IUJ40_RS03910 (IUJ40_03910) | - | 759816..760028 (+) | 213 | WP_078101489.1 | Ig-like domain-containing protein | - |
| IUJ40_RS03915 (IUJ40_03915) | gpG | 760078..760428 (+) | 351 | WP_001096355.1 | phage tail assembly chaperone G | - |
| IUJ40_RS15150 | gpGT | 760479..760616 (+) | 138 | WP_001549167.1 | phage tail assembly chaperone GT | - |
| IUJ40_RS03920 (IUJ40_03920) | - | 760673..765202 (+) | 4530 | WP_001643732.1 | phage tail tape measure protein | - |
| IUJ40_RS03925 (IUJ40_03925) | - | 765199..766683 (+) | 1485 | WP_000567413.1 | phage distal tail protein | - |
| IUJ40_RS03930 (IUJ40_03930) | - | 766699..770484 (+) | 3786 | WP_000582190.1 | phage tail spike protein | - |
| IUJ40_RS03935 (IUJ40_03935) | - | 770474..770626 (+) | 153 | WP_001153681.1 | hypothetical protein | - |
| IUJ40_RS03940 (IUJ40_03940) | - | 770673..770960 (+) | 288 | WP_001040259.1 | hypothetical protein | - |
| IUJ40_RS03945 (IUJ40_03945) | - | 771016..771390 (+) | 375 | WP_000340977.1 | hypothetical protein | - |
| IUJ40_RS03950 (IUJ40_03950) | sea | 771811..772584 (+) | 774 | WP_000750406.1 | staphylococcal enterotoxin type A | - |
| IUJ40_RS03955 (IUJ40_03955) | pepG1 | 772735..772869 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| IUJ40_RS03960 (IUJ40_03960) | - | 772922..773029 (-) | 108 | WP_001791821.1 | hypothetical protein | - |
| IUJ40_RS03965 (IUJ40_03965) | - | 773081..773335 (+) | 255 | WP_000611512.1 | phage holin | - |
| IUJ40_RS03970 (IUJ40_03970) | - | 773347..774102 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| IUJ40_RS03975 (IUJ40_03975) | sak | 774293..774784 (+) | 492 | WP_000919350.1 | staphylokinase | - |
| IUJ40_RS03980 (IUJ40_03980) | - | 775431..775769 (+) | 339 | Protein_780 | SH3 domain-containing protein | - |
| IUJ40_RS03985 (IUJ40_03985) | - | 775864..776313 (-) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| IUJ40_RS03990 (IUJ40_03990) | - | 776556..777728 (+) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| IUJ40_RS03995 (IUJ40_03995) | scn | 778331..778681 (+) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17627.49 Da Isoelectric Point: 5.2672
>NTDB_id=501567 IUJ40_RS03775 WP_000934764.1 746543..747013(+) (ssbA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=501567 IUJ40_RS03775 WP_000934764.1 746543..747013(+) (ssbA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |