Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IUJ52_RS07910 Genome accession   NZ_CP064379
Coordinates   1693461..1694576 (-) Length   371 a.a.
NCBI ID   WP_004728781.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1688461..1699576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS07880 (IUJ52_07875) hemF 1689033..1689947 (-) 915 WP_004728793.1 oxygen-dependent coproporphyrinogen oxidase -
  IUJ52_RS07885 (IUJ52_07880) - 1689967..1690524 (-) 558 WP_004728791.1 L-threonylcarbamoyladenylate synthase -
  IUJ52_RS07890 (IUJ52_07885) purE 1690722..1691207 (+) 486 WP_004728789.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IUJ52_RS07895 (IUJ52_07890) - 1691211..1692344 (+) 1134 WP_004728787.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IUJ52_RS07900 (IUJ52_07895) - 1692378..1692956 (-) 579 WP_004728785.1 type I DNA topoisomerase -
  IUJ52_RS07905 (IUJ52_07900) - 1692982..1693458 (-) 477 WP_004728783.1 DUF494 family protein -
  IUJ52_RS07910 (IUJ52_07905) dprA 1693461..1694576 (-) 1116 WP_004728781.1 DNA-processing protein DprA Machinery gene
  IUJ52_RS07915 (IUJ52_07910) - 1694576..1695694 (-) 1119 WP_004728780.1 LysM peptidoglycan-binding domain-containing protein -
  IUJ52_RS07920 (IUJ52_07915) def 1695834..1696346 (+) 513 WP_004728778.1 peptide deformylase -
  IUJ52_RS07925 (IUJ52_07920) fmt 1696365..1697312 (+) 948 WP_004728777.1 methionyl-tRNA formyltransferase -
  IUJ52_RS07930 (IUJ52_07925) rsmB 1697363..1698643 (+) 1281 WP_004728775.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40684.47 Da        Isoelectric Point: 6.7805

>NTDB_id=501439 IUJ52_RS07910 WP_004728781.1 1693461..1694576(-) (dprA) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MLERDLAAWLAFSFAPQLGMHRLQRLASRHALHDLKQQLGREGEAAGLKAHQIDYLQQQADREVDACLLWCQQAEHRHIV
TPFHAHYPARLKEIAAAPPVLFVAGRLDTLCAPQIAIVGSRNASIDSQHIAHQFAAQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLGCIYPARHRTLAERIMASGAVVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAVEQSREVFVVPGSIRHPNCHGSNQLIRQGACLVQHIDHILDEVGPMMDWRRNQSQPEQTELFSCSYHEEELPFPEL
LANVGEEATPVDILANRTHIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=501439 IUJ52_RS07910 WP_004728781.1 1693461..1694576(-) (dprA) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGCTAGAACGTGATCTGGCGGCGTGGCTGGCATTTAGCTTTGCCCCCCAATTGGGAATGCATCGATTACAGCGTTTGGC
CAGCCGCCATGCGTTACATGATCTCAAACAACAGCTGGGTCGAGAAGGCGAAGCGGCCGGGCTCAAAGCCCATCAGATTG
ACTACCTACAGCAGCAAGCGGATCGTGAAGTTGATGCTTGCCTGCTTTGGTGTCAGCAAGCGGAACATCGCCACATCGTG
ACCCCATTTCATGCCCATTATCCGGCGCGATTAAAAGAGATTGCCGCAGCGCCTCCGGTGCTGTTTGTGGCCGGTCGACT
TGACACGCTGTGCGCGCCACAAATCGCGATTGTGGGCAGCCGCAATGCCAGTATCGACAGTCAACACATCGCTCATCAAT
TTGCTGCGCAACTGGTCGAACATGGTTTGGTGGTCACCAGTGGGTTGGCGCTGGGCATCGATGGTTATGCCCATGATGGC
GCCCTGAAAGCGGGCGGCGAAACTATCGCGGTATTGGGTTCAGGGTTGGGATGTATTTATCCGGCGCGTCATCGCACGTT
GGCGGAGCGGATTATGGCCAGTGGGGCGGTGGTGTCGGAGTTTCGCCCGGATGCCAAACCGAGGCCTGATCACTTTCCGC
GTCGCAATCGTATTATTAGTGGCTTGTCGTTGGGTGTTCTGGTGGTGGAAGCGGCCGAGAAAAGTGGCTCGCTCATCACC
GCGCGTTACGCTGTTGAACAGAGCCGCGAGGTGTTTGTGGTTCCAGGCTCGATTCGTCATCCCAATTGCCATGGCAGTAA
CCAGTTGATTCGGCAAGGCGCGTGTCTGGTTCAGCACATCGACCACATACTCGATGAGGTTGGTCCCATGATGGATTGGC
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTTGCTCATATCACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGAAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCCATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.943

98.922

0.623
  dprA Vibrio cholerae strain A1552

61.456

100

0.615
  dprA Glaesserella parasuis strain SC1401

44.681

100

0.453
  dprA Legionella pneumophila strain ERS1305867

42.308

98.113

0.415
  dprA Neisseria meningitidis strain C311

35.627

100

0.391
  dprA Neisseria meningitidis MC58

35.627

100

0.391
  dprA Neisseria gonorrhoeae MS11

34.729

100

0.38
  dprA Neisseria gonorrhoeae strain FA1090

34.236

100

0.375