Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IQ680_RS05755 Genome accession   NZ_CP064266
Coordinates   1050716..1051297 (+) Length   193 a.a.
NCBI ID   WP_001049156.1    Uniprot ID   J8DR96
Organism   Bacillus pseudomycoides strain N451-2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1045716..1056297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS05720 - 1046670..1046876 (+) 207 WP_003201925.1 DUF1657 domain-containing protein -
  IQ680_RS05725 - 1046992..1047480 (+) 489 WP_098336689.1 YhcN/YlaJ family sporulation lipoprotein -
  IQ680_RS05730 spoVAC 1047515..1047991 (+) 477 WP_017153375.1 stage V sporulation protein AC -
  IQ680_RS05735 spoVAD 1047992..1049008 (+) 1017 WP_098336687.1 stage V sporulation protein AD -
  IQ680_RS05740 spoVAE 1049005..1049355 (+) 351 WP_098336686.1 stage V sporulation protein AE -
  IQ680_RS05745 - 1049367..1049573 (+) 207 WP_098336685.1 DUF1657 domain-containing protein -
  IQ680_RS05750 - 1049595..1050464 (+) 870 WP_243525131.1 DUF421 domain-containing protein -
  IQ680_RS05755 clpP 1050716..1051297 (+) 582 WP_001049156.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  IQ680_RS05760 - 1051610..1052320 (-) 711 WP_243525132.1 Crp/Fnr family transcriptional regulator -
  IQ680_RS05765 rd 1052541..1052705 (-) 165 WP_000759862.1 rubredoxin -
  IQ680_RS05770 - 1052732..1053952 (-) 1221 WP_243525133.1 FAD-dependent oxidoreductase -
  IQ680_RS05775 - 1053974..1055209 (-) 1236 WP_243525134.1 FprA family A-type flavoprotein -
  IQ680_RS05780 - 1055370..1056077 (-) 708 WP_243525135.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21431.68 Da        Isoelectric Point: 5.0423

>NTDB_id=500393 IQ680_RS05755 WP_001049156.1 1050716..1051297(+) (clpP) [Bacillus pseudomycoides strain N451-2]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=500393 IQ680_RS05755 WP_001049156.1 1050716..1051297(+) (clpP) [Bacillus pseudomycoides strain N451-2]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGCGCAATTGATGACAACGTCGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCCC
AGGACCCAGAAAAAGATATTCACATATACATCAACAGCCCTGGTGGTTCTATCACAGCGGGTATGGCAATTTACGATACA
ATGCAATTTATTAAACCACAAGTATCAACAATTTGTATCGGTATGGCAGCATCTATGGGCGCTTTCCTACTTGCAGCAGG
TGAAAAAGGAAAACGTTTCGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAATTAAACCAAATTCTTGCTGATCGCACAGGTCAA
CCATTAGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAGAGCACTAGAATACGGCTTAATCGA
TAAAATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8DR96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

89.583

99.482

0.891
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.553

97.409

0.658
  clpP Streptococcus thermophilus LMG 18311

60.938

99.482

0.606
  clpP Streptococcus thermophilus LMD-9

60.938

99.482

0.606
  clpP Lactococcus lactis subsp. cremoris KW2

59.375

99.482

0.591
  clpP Streptococcus pneumoniae D39

57.812

99.482

0.575
  clpP Streptococcus pneumoniae Rx1

57.812

99.482

0.575
  clpP Streptococcus pneumoniae R6

57.812

99.482

0.575
  clpP Streptococcus pneumoniae TIGR4

57.812

99.482

0.575
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

57.292

99.482

0.57
  clpP Streptococcus mutans UA159

55.959

100

0.56
  clpP Streptococcus pyogenes JRS4

56.25

99.482

0.56
  clpP Streptococcus pyogenes MGAS315

56.25

99.482

0.56