Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   IRA68_RS00015 Genome accession   NZ_CP064097
Coordinates   2035..3276 (-) Length   413 a.a.
NCBI ID   WP_279401087.1    Uniprot ID   -
Organism   Priestia aryabhattai strain B2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1..8276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRA68_RS00010 recA 798..1835 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  IRA68_RS00015 cinA 2035..3276 (-) 1242 WP_279401087.1 competence/damage-inducible protein A Machinery gene
  IRA68_RS00020 pgsA 3293..3877 (-) 585 WP_243495108.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IRA68_RS00025 - 4022..5005 (-) 984 WP_223546233.1 RodZ domain-containing protein -
  IRA68_RS00030 - 5018..5809 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  IRA68_RS00035 - 6023..6283 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  IRA68_RS00040 - 6349..7074 (-) 726 WP_243495109.1 SDR family oxidoreductase -

Sequence


Protein


Download         Length: 413 a.a.        Molecular weight: 44968.06 Da        Isoelectric Point: 4.9937

>NTDB_id=499524 IRA68_RS00015 WP_279401087.1 2035..3276(-) (cinA) [Priestia aryabhattai strain B2]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVIGDNAQRLKEVIVTAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSTVLPNDYGMAPGMGLTVEGKHYILFPGPPKELYPM
YEAYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEVVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVHIGVAYKDQTPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKTIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=499524 IRA68_RS00015 WP_279401087.1 2035..3276(-) (cinA) [Priestia aryabhattai strain B2]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGGCAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACAGTAATAGGAGATAATGCACAGCGCTTGAAAGAAGTGA
TTGTTACAGCTCAAACACGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGTTGACAACAAATGCGGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTACTTGAAGGTTCGACAGTGCTCCCTAATGATTACGGAA
TGGCTCCGGGTATGGGGCTTACAGTAGAGGGAAAACACTATATTCTATTCCCAGGGCCGCCAAAAGAGCTCTATCCAATG
TATGAAGCATATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGTTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACAAACCCGACGATTGCACCGCTTG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGTTTGACGATTGCTTCAGCCGAAAGTTTAACCGGCGGGTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGTTGTTAAAGGCAGCCTGGTAGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGTTTTACGGGTGTAGCTGGACCCTCTAAACAAGAAGGACACCCTGTAGGAACAGTGCATATAGGGG
TCGCTTATAAGGATCAAACTCCTCAAGTTTACAGTTTGCAGCTATCTGGAAGCCGCCAAGGAATTCGTTCACGAACGGTT
AATTACGGCTGTCATTACGTATTGAAGACGATAAAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.024

99.274

0.586

  cinA Streptococcus mitis NCTC 12261

46.667

100

0.475

  cinA Streptococcus mitis SK321

46.667

100

0.475

  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47

  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465

  cinA Streptococcus pneumoniae R6

45.714

100

0.465

  cinA Streptococcus pneumoniae D39

45.476

100

0.462

  cinA Streptococcus mutans UA159

44.444

100

0.446