Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ISX45_RS15535 Genome accession   NZ_CP064060
Coordinates   3113924..3114418 (-) Length   164 a.a.
NCBI ID   WP_181555275.1    Uniprot ID   A0A7V9Z5J9
Organism   Thermaerobacillus caldiproteolyticus strain U458     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3108924..3119418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX45_RS15515 (ISX45_15515) rplI 3110151..3110600 (-) 450 WP_181555278.1 50S ribosomal protein L9 -
  ISX45_RS15520 (ISX45_15520) - 3110600..3112570 (-) 1971 WP_181555277.1 DHH family phosphoesterase -
  ISX45_RS15525 (ISX45_15525) - 3112612..3113541 (-) 930 WP_194519378.1 YybS family protein -
  ISX45_RS15530 (ISX45_15530) rpsR 3113649..3113885 (-) 237 WP_027408127.1 30S ribosomal protein S18 -
  ISX45_RS15535 (ISX45_15535) ssbA 3113924..3114418 (-) 495 WP_181555275.1 single-stranded DNA-binding protein Machinery gene
  ISX45_RS15540 (ISX45_15540) rpsF 3114451..3114741 (-) 291 WP_181555274.1 30S ribosomal protein S6 -
  ISX45_RS15545 (ISX45_15545) ychF 3114847..3115947 (-) 1101 WP_181555273.1 redox-regulated ATPase YchF -
  ISX45_RS15550 (ISX45_15550) - 3116029..3118044 (-) 2016 WP_181555272.1 molybdopterin-dependent oxidoreductase -
  ISX45_RS15555 (ISX45_15555) - 3118088..3118282 (-) 195 WP_194519379.1 DUF951 domain-containing protein -
  ISX45_RS15560 (ISX45_15560) - 3118308..3119207 (-) 900 WP_181555270.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18284.23 Da        Isoelectric Point: 4.6791

>NTDB_id=498910 ISX45_RS15535 WP_181555275.1 3113924..3114418(-) (ssbA) [Thermaerobacillus caldiproteolyticus strain U458]
MINRVILVGRLTRDPELRYTPNGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQTR
SYEGQDGKRVYVTEVVADSVQFLEPKGSMEQRGATAGGYYGEPFPFGQNQNPRNTNDHGFSRIDEDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=498910 ISX45_RS15535 WP_181555275.1 3113924..3114418(-) (ssbA) [Thermaerobacillus caldiproteolyticus strain U458]
ATGATTAACCGCGTAATTCTTGTAGGGAGACTTACAAGAGACCCAGAATTACGCTATACTCCAAATGGAGTAGCTGTTGC
CACGTTTACGCTTGCTGTCAATCGTCCGTTTACGAACCAACAAGGTGAGCGTGAAGCGGATTTTATTAACTGTGTCGTCT
GGCGTCGTCCCGCGGAAAATGTAGCCAACTTCTTGAAAAAAGGAAGTTTAGCTGGAGTGGACGGTCGCTTACAAACGAGA
AGTTATGAGGGCCAAGATGGAAAACGTGTGTACGTGACTGAAGTGGTTGCTGATAGCGTTCAATTTCTTGAACCTAAAGG
TAGCATGGAGCAACGTGGTGCAACAGCAGGTGGCTACTATGGAGAGCCATTTCCATTTGGACAAAATCAGAACCCGCGTA
ACACAAACGATCATGGCTTTAGTCGCATCGATGAAGATCCATTTGCCAATGATGGACAACCTATTGATATTTCCGATGAC
GACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V9Z5J9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.816

100

0.72
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Glaesserella parasuis strain SC1401

34.054

100

0.384
  ssb Neisseria meningitidis MC58

35.028

100

0.378
  ssb Neisseria gonorrhoeae MS11

35.028

100

0.378
  ssb Vibrio cholerae strain A1552

33.52

100

0.366