Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IM698_RS02870 Genome accession   NZ_CP063682
Coordinates   659767..660066 (+) Length   99 a.a.
NCBI ID   WP_260810592.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 654767..665066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS02860 (IM698_02855) - 657163..657456 (+) 294 WP_012604504.1 HU family DNA-binding protein -
  IM698_RS02865 (IM698_02860) ppiD 657676..659541 (+) 1866 WP_260810591.1 peptidylprolyl isomerase -
  IM698_RS02870 (IM698_02865) comEA 659767..660066 (+) 300 WP_260810592.1 ComEA family DNA-binding protein Machinery gene
  IM698_RS02875 (IM698_02870) rrtA 660057..660605 (-) 549 WP_260810593.1 rhombosortase -
  IM698_RS02880 (IM698_02875) - 660615..661214 (+) 600 WP_248388011.1 tRNA-uridine aminocarboxypropyltransferase -
  IM698_RS02885 (IM698_02880) - 661247..662590 (-) 1344 WP_248374340.1 anti-phage deoxyguanosine triphosphatase -
  IM698_RS02890 (IM698_02885) yfbR 662646..663230 (-) 585 WP_017060613.1 5'-deoxynucleotidase -
  IM698_RS02895 (IM698_02890) - 663573..664808 (-) 1236 WP_248374341.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10811.40 Da        Isoelectric Point: 4.7719

>NTDB_id=496206 IM698_RS02870 WP_260810592.1 659767..660066(+) (comEA) [Vibrio splendidus strain ED144]
MRTIYSTLFLSFLMLLSPAVFANSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAKEIVDYRDQNGAFTTADDLV
SVKGIGEATVKKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=496206 IM698_RS02870 WP_260810592.1 659767..660066(+) (comEA) [Vibrio splendidus strain ED144]
ATGCGCACGATATATTCAACACTATTTCTTTCATTTCTGATGCTTTTAAGCCCTGCTGTGTTTGCAAATAGCCCAACTAA
GGCTGAGCTTTACGATGGCATTGAGATTACGGTCAACATCAATACCGCGACAGCAGAAGAACTTTCAGCACTATTGGTTG
GTGTAGGTGACAAGAAAGCCAAAGAGATCGTCGATTACAGAGATCAGAACGGGGCATTTACGACTGCTGATGATTTGGTG
AGTGTCAAAGGGATAGGTGAAGCTACGGTTAAAAAGAATCGCGAAAGAATTCAACTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

54.902

100

0.566
  comEA Vibrio cholerae C6706

54.902

100

0.566
  comEA Vibrio parahaemolyticus RIMD 2210633

56.383

94.949

0.535
  comEA Vibrio campbellii strain DS40M4

58.621

87.879

0.515
  comEA Acinetobacter baumannii strain A118

32.331

100

0.434
  comE1/comEA Haemophilus influenzae Rd KW20

36.036

100

0.404
  comEA Acinetobacter baylyi ADP1

47.561

82.828

0.394