Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   SALIVA_RS01365 Genome accession   NC_017595
Coordinates   258202..259101 (+) Length   299 a.a.
NCBI ID   WP_014633878.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 253202..264101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS01345 (SALIVA_0262) trkA 254365..255714 (-) 1350 WP_014633874.1 Trk system potassium transporter TrkA -
  SALIVA_RS01350 (SALIVA_0263) - 255992..256501 (+) 510 WP_014633875.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  SALIVA_RS01355 (SALIVA_0264) - 256811..257368 (+) 558 WP_014633876.1 ECF transporter S component -
  SALIVA_RS01360 (SALIVA_0265) - 257371..258021 (+) 651 WP_014633877.1 phosphatase PAP2 family protein -
  SALIVA_RS01365 (SALIVA_0266) comR 258202..259101 (+) 900 WP_014633878.1 helix-turn-helix transcriptional regulator Regulator
  SALIVA_RS01370 (SALIVA_0267) comA 259276..261372 (+) 2097 WP_014633879.1 peptide cleavage/export ABC transporter Regulator
  SALIVA_RS01375 (SALIVA_0268) - 261482..261814 (+) 333 WP_014633880.1 DUF805 domain-containing protein -
  SALIVA_RS01380 (SALIVA_0269) - 261866..263260 (-) 1395 WP_231848733.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35196.71 Da        Isoelectric Point: 6.1833

>NTDB_id=49448 SALIVA_RS01365 WP_014633878.1 258202..259101(+) (comR) [Streptococcus salivarius JIM8777]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMSDLLDHDNITIPNEYYE
MKNRLIKFPTYRNPERIKSKLALIEEVYEKFFELLPEEELLTLDILENILSFTNWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQFDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKAIAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKKAAENYDKAIMFASVLEDSVLEESIRAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=49448 SALIVA_RS01365 WP_014633878.1 258202..259101(+) (comR) [Streptococcus salivarius JIM8777]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGTCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTAACTGTGCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCACTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGTCTGATCTATTGGATCATGACAATATTACCATTCCTAACGAATATTATGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAACCCAGAAAGAATAAAGTCTAAACTTGCCTTAATTGAGGAAGT
CTATGAGAAATTCTTTGAACTTCTTCCAGAAGAAGAGTTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
ATTGGGAGGAGAGCCCAAAGGTTGAAGAAATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTCTATGGAAGAAAACAGTTTGACAAAAAACTTTTTGAAAGGAT
TGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTCTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTTTCAGACTTCTTAACAGTTGTGGATAAAGCAATAGCCGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCTAAATATGAACTTCTGCATAAGGGAAATAAGAAAAAGGC
TGCAGAGAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAAGAAAGTATAAGAGCAGGGA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

96.656

100

0.967
  comR Streptococcus salivarius SK126

96.656

100

0.967
  comR Streptococcus thermophilus LMG 18311

93.311

100

0.933
  comR Streptococcus thermophilus LMD-9

92.642

100

0.926
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

41.806

100

0.418

Multiple sequence alignment