Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SALIVA_RS01370 Genome accession   NC_017595
Coordinates   259276..261372 (+) Length   698 a.a.
NCBI ID   WP_014633879.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 254276..266372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS01345 (SALIVA_0262) trkA 254365..255714 (-) 1350 WP_014633874.1 Trk system potassium transporter TrkA -
  SALIVA_RS01350 (SALIVA_0263) - 255992..256501 (+) 510 WP_014633875.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  SALIVA_RS01355 (SALIVA_0264) - 256811..257368 (+) 558 WP_014633876.1 ECF transporter S component -
  SALIVA_RS01360 (SALIVA_0265) - 257371..258021 (+) 651 WP_014633877.1 phosphatase PAP2 family protein -
  SALIVA_RS01365 (SALIVA_0266) comR 258202..259101 (+) 900 WP_014633878.1 helix-turn-helix transcriptional regulator Regulator
  SALIVA_RS01370 (SALIVA_0267) comA 259276..261372 (+) 2097 WP_014633879.1 peptide cleavage/export ABC transporter Regulator
  SALIVA_RS01375 (SALIVA_0268) - 261482..261814 (+) 333 WP_014633880.1 DUF805 domain-containing protein -
  SALIVA_RS01380 (SALIVA_0269) - 261866..263260 (-) 1395 WP_231848733.1 DUF4153 domain-containing protein -
  SALIVA_RS01385 (SALIVA_0270) - 263665..264180 (+) 516 WP_002886548.1 AmiS/UreI family transporter -
  SALIVA_RS01390 (SALIVA_0271) - 264205..264507 (+) 303 WP_002886558.1 urease subunit gamma -
  SALIVA_RS01395 (SALIVA_0272) - 264519..264830 (+) 312 WP_002886559.1 urease subunit beta -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78433.38 Da        Isoelectric Point: 8.9687

>NTDB_id=49449 SALIVA_RS01370 WP_014633879.1 259276..261372(+) (comA) [Streptococcus salivarius JIM8777]
MSKYPYISQVDQRDCGVAALAMILKHYGSSYSLAYLRELAQTSREGTSALGLVEAAKQLGLETQAIRADLDLFKQESLSY
PFIAHVVKEGGLQHYYTVFGQIKGKLVIGDPDPSKKVIKIPLEEFAKEWTGVALFFVPGETYTKYKEDVPGLLSFLPILF
RRKGLIAVIVLLSFLVTLVNIIGSYYLQSIIDRLIPQEAYTLLTMISLGLCISYLAQQVFTFFKDYLLHRLGNYLSIAVI
LPYIKHVLSLPISFFSSRRTGEITSRFGDANTIIDALASTILSIFLDVTIVMTLAVALILQNQSLFVMTLTVVPLYVLII
LAFYKLFEKENYQLMEANSQVNTAVIDDLRGIETLKSLRVEERRYQEIEVKFHDYLKKSLSKAKWQLTQDGLKTGVQLVS
NVFILWYGAQLVMEGQLSAGQLITYNMLLNYFTTPLINIINLQSKIQQAKVANNRLQEVYVVDKEEKGKLKELSFKQLAL
KGVSHRFSYQQETLSKIDLTIHKGEKIALMGKSGSGKTTLAKMLSGYYTKSSGHVTLDKDAIGHAELRQMVTYVPQQTYV
FTGTILENLMLGFEGEVDEKELLKVCQHADILEDIQKMPLGFQTQVSEDGGLSGGQKQRLAIARALLSKQPILIFDEATS
GLDSDTESRVMANLAKIKRTMIFIAHRNSVRQHVSRVVTMVSGQIESDSPNFNPFQFI

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=49449 SALIVA_RS01370 WP_014633879.1 259276..261372(+) (comA) [Streptococcus salivarius JIM8777]
ATGTCAAAATATCCATATATTTCACAGGTTGATCAGCGTGACTGTGGTGTCGCTGCCTTGGCCATGATTCTTAAACACTA
TGGTTCATCTTATAGTTTAGCTTATTTGCGGGAATTGGCTCAGACTTCTCGTGAAGGCACTTCTGCGCTTGGTTTGGTGG
AAGCGGCTAAGCAGTTGGGTCTTGAAACTCAGGCCATTCGTGCGGATTTAGACTTGTTTAAACAAGAAAGCCTATCTTAT
CCTTTTATTGCACATGTGGTTAAAGAAGGTGGACTGCAACATTATTATACAGTGTTTGGTCAAATCAAAGGGAAGCTTGT
TATTGGTGATCCAGATCCTAGCAAGAAGGTCATTAAAATACCCTTAGAGGAGTTTGCCAAAGAGTGGACGGGAGTTGCTC
TCTTTTTTGTTCCAGGAGAAACCTACACTAAATACAAAGAAGATGTGCCTGGGCTTCTTTCATTTTTACCAATTTTGTTT
CGTCGTAAGGGATTGATTGCAGTCATTGTCTTACTGAGTTTTCTAGTGACCCTTGTTAATATTATTGGTTCTTATTATTT
GCAATCTATTATTGACCGCTTGATTCCTCAGGAGGCCTACACTCTTCTGACAATGATTTCGCTAGGCCTATGTATCTCTT
ATCTAGCTCAACAAGTATTTACTTTTTTCAAAGATTATCTTCTACATCGATTGGGGAATTACTTGTCCATTGCTGTCATT
CTTCCTTATATTAAGCATGTTCTTTCCCTACCTATTAGTTTCTTTAGTTCACGTCGTACTGGTGAAATCACGTCACGTTT
TGGAGATGCCAACACTATTATCGATGCTCTAGCTTCAACGATTTTATCGATTTTCCTAGATGTGACCATTGTGATGACTT
TAGCTGTGGCCCTTATTTTACAAAATCAGTCACTTTTTGTGATGACTCTCACGGTAGTGCCTCTTTATGTGTTAATCATT
TTGGCATTCTATAAGCTTTTTGAAAAGGAAAATTATCAATTGATGGAGGCAAATAGTCAGGTCAATACCGCTGTTATTGA
TGATTTGCGAGGTATTGAAACCTTAAAATCCTTGAGAGTTGAAGAGAGACGCTATCAGGAAATTGAGGTGAAATTCCATG
ACTATTTGAAGAAGTCTTTGTCTAAGGCCAAGTGGCAATTAACACAGGATGGTTTAAAGACAGGGGTTCAGTTAGTTTCC
AATGTCTTTATCCTCTGGTATGGGGCACAATTGGTCATGGAAGGACAGCTATCTGCAGGTCAGTTGATTACCTATAATAT
GTTGCTGAATTATTTTACAACTCCTTTAATTAATATTATCAATCTCCAATCTAAAATTCAGCAAGCCAAAGTAGCCAATA
ATCGTCTTCAAGAAGTTTATGTTGTGGATAAGGAAGAAAAAGGAAAACTTAAAGAGTTATCCTTTAAACAACTTGCTCTT
AAGGGTGTCAGTCACCGTTTTAGTTATCAGCAAGAGACGCTTAGTAAGATTGATTTAACGATTCATAAGGGTGAGAAAAT
TGCCCTCATGGGTAAAAGTGGATCTGGGAAAACGACCTTGGCTAAAATGTTGTCGGGTTATTACACAAAATCTAGTGGTC
ATGTAACCCTAGATAAAGATGCTATTGGCCATGCGGAGCTGCGTCAAATGGTGACTTACGTTCCCCAGCAGACCTATGTG
TTTACTGGAACCATTTTAGAAAATCTGATGTTAGGATTTGAAGGAGAAGTTGACGAGAAAGAGCTTCTTAAGGTTTGCCA
ACATGCTGATATCTTAGAGGATATTCAAAAAATGCCACTAGGTTTTCAGACTCAAGTATCTGAGGATGGTGGTCTATCTG
GTGGTCAAAAACAACGCTTGGCGATAGCGAGGGCCCTCTTGTCCAAGCAGCCTATCTTGATTTTTGACGAAGCTACCAGT
GGTCTCGATAGTGATACTGAAAGCAGGGTCATGGCTAATCTTGCTAAGATTAAACGAACAATGATTTTTATTGCTCACCG
CAATAGTGTCCGTCAACATGTCAGTCGTGTGGTGACCATGGTGAGTGGCCAGATTGAGTCAGACAGTCCTAATTTCAATC
CATTCCAGTTTATTTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(3-139)

ABC transporter transmembrane region (ABC_membrane)

(167-436)

ABC transporter (ABC_tran)

(494-640)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.835

98.997

0.533
  comA Streptococcus gordonii str. Challis substr. CH1

53.305

99.713

0.532
  comA Streptococcus mitis NCTC 12261

53.401

98.997

0.529
  comA Streptococcus pneumoniae Rx1

53.256

98.997

0.527
  comA Streptococcus pneumoniae D39

53.256

98.997

0.527
  comA Streptococcus pneumoniae R6

53.256

98.997

0.527
  comA Streptococcus pneumoniae TIGR4

53.111

98.997

0.526
  comA/nlmT Streptococcus mutans UA159

50.145

98.854

0.496

Multiple sequence alignment