Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JNUCC6_RS20305 Genome accession   NZ_CP063302
Coordinates   4145925..4147178 (+) Length   417 a.a.
NCBI ID   WP_193738765.1    Uniprot ID   -
Organism   Viridibacillus sp. JNUCC-6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4140925..4152178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC6_RS20275 (JNUCC6_20275) yfmH 4140978..4142306 (+) 1329 WP_053417414.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  JNUCC6_RS20280 (JNUCC6_20280) ymfI 4142309..4143037 (+) 729 WP_193738761.1 elongation factor P 5-aminopentanone reductase -
  JNUCC6_RS20285 (JNUCC6_20285) - 4143080..4143337 (+) 258 WP_038184292.1 DUF3243 domain-containing protein -
  JNUCC6_RS20290 (JNUCC6_20290) - 4143453..4144253 (+) 801 WP_193738762.1 DUF3388 domain-containing protein -
  JNUCC6_RS20295 (JNUCC6_20295) - 4144261..4145163 (+) 903 WP_370588299.1 helix-turn-helix domain-containing protein -
  JNUCC6_RS20300 (JNUCC6_20300) pgsA 4145213..4145791 (+) 579 WP_193738764.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JNUCC6_RS20305 (JNUCC6_20305) cinA 4145925..4147178 (+) 1254 WP_193738765.1 competence/damage-inducible protein A Machinery gene
  JNUCC6_RS20310 (JNUCC6_20310) recA 4147358..4148419 (+) 1062 WP_053417410.1 recombinase RecA Machinery gene
  JNUCC6_RS20315 (JNUCC6_20315) rny 4148632..4150188 (+) 1557 WP_053417409.1 ribonuclease Y -
  JNUCC6_RS20320 (JNUCC6_20320) - 4150327..4151124 (+) 798 WP_193738766.1 TIGR00282 family metallophosphoesterase -
  JNUCC6_RS20325 (JNUCC6_20325) - 4151215..4151481 (+) 267 WP_038184313.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45526.82 Da        Isoelectric Point: 4.7713

>NTDB_id=494323 JNUCC6_RS20305 WP_193738765.1 4145925..4147178(+) (cinA) [Viridibacillus sp. JNUCC-6]
MNAEIIAVGSELLLGQITNTNARFISGQLSELGINVYYHTVVGDNVDRLVNAIKVAETRADLIIFSGGLGPTKDDLTKET
IARHLGTVLEIDNYAMQSIEEFFTLQNRIMTDNNRKQALVLKDCEVLINRHGMAPGMLLEKNNRIYMLLPGPPKELEPMF
QFEAKPKLAARVNDGAQIVSHVLRFYGIGEAELEVKVQDLLENQTNPTIAPLASDGEVTLRVTAKAYGLEQAEQLIAGAK
DEILRRVGQFMYGENDDSLSSKTAEILIDNNLTIAAAESLTAGLFQSELAENPGISQSLIGGVVTYTEQAKREQLGISAD
LLENYGIVSSQCAVAMASKVKEKFGTDIGIGLTGAAGPEGHDNQPAGTVWIAVVIGDNEPQTYQLHLTGQRNTNRLRAVK
RTFAFIIQLLNEQGYRK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=494323 JNUCC6_RS20305 WP_193738765.1 4145925..4147178(+) (cinA) [Viridibacillus sp. JNUCC-6]
ATGAATGCAGAAATCATTGCAGTTGGATCAGAGCTTTTACTGGGTCAAATTACGAATACAAACGCACGTTTTATATCAGG
TCAATTATCTGAGCTAGGAATTAATGTGTATTACCACACTGTCGTCGGCGATAATGTAGATCGTTTAGTCAACGCCATTA
AAGTAGCTGAGACCCGTGCAGATCTCATTATTTTCTCAGGAGGCTTAGGGCCAACGAAAGATGATTTAACGAAGGAAACA
ATAGCACGACATTTAGGAACTGTACTGGAAATAGATAATTATGCTATGCAATCGATTGAAGAATTTTTCACTCTTCAAAA
TCGTATTATGACAGATAATAATCGTAAACAGGCACTCGTATTAAAAGATTGTGAAGTACTTATAAATCGCCATGGTATGG
CTCCGGGTATGCTGTTAGAAAAAAATAACCGTATATATATGTTACTGCCAGGACCGCCGAAGGAATTGGAGCCTATGTTC
CAATTTGAAGCGAAGCCAAAATTAGCTGCAAGAGTAAATGATGGAGCTCAGATTGTGTCTCACGTATTACGCTTCTATGG
CATCGGTGAGGCAGAGTTAGAGGTAAAGGTACAAGACTTACTAGAAAACCAAACAAACCCTACTATAGCACCGCTAGCGT
CAGATGGGGAAGTAACTCTACGTGTTACAGCGAAGGCATATGGTCTAGAACAAGCTGAACAGCTAATAGCTGGAGCAAAG
GATGAAATATTACGCAGAGTTGGGCAGTTTATGTACGGTGAGAATGATGATTCTCTTTCTTCTAAAACAGCCGAAATTCT
TATTGACAACAATTTAACTATTGCCGCTGCAGAAAGTTTAACTGCCGGACTCTTTCAATCTGAATTAGCAGAAAACCCTG
GTATAAGTCAATCGTTAATTGGTGGAGTTGTTACTTATACAGAACAAGCAAAACGTGAGCAACTAGGAATTTCAGCTGAC
TTATTAGAAAATTACGGAATTGTGAGTTCCCAATGTGCTGTAGCAATGGCTAGTAAAGTAAAAGAAAAGTTCGGTACAGA
TATAGGTATAGGTTTAACAGGGGCAGCGGGTCCTGAAGGGCATGATAATCAACCAGCCGGTACAGTGTGGATAGCTGTAG
TTATCGGTGATAATGAACCTCAAACGTATCAATTACATCTAACAGGGCAACGCAATACAAATCGTTTACGCGCAGTGAAG
CGTACTTTTGCTTTTATTATTCAATTATTAAACGAACAAGGTTATCGTAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.214

98.801

0.506
  cinA Streptococcus pneumoniae TIGR4

42.995

99.281

0.427
  cinA Streptococcus pneumoniae Rx1

42.512

99.281

0.422
  cinA Streptococcus pneumoniae R6

42.512

99.281

0.422
  cinA Streptococcus pneumoniae D39

42.271

99.281

0.42
  cinA Streptococcus mutans UA159

41.707

98.321

0.41
  cinA Streptococcus mitis SK321

44.503

91.607

0.408
  cinA Streptococcus mitis NCTC 12261

43.979

91.607

0.403