Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   SSAL_RS08685 Genome accession   NC_017594
Coordinates   1870902..1871801 (-) Length   299 a.a.
NCBI ID   WP_045001949.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1865902..1876801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS08670 (Ssal_01904) - 1866746..1868137 (+) 1392 WP_014633611.1 DUF4153 domain-containing protein -
  SSAL_RS08675 (Ssal_01905) - 1868189..1868521 (-) 333 WP_014633612.1 DUF805 domain-containing protein -
  SSAL_RS08680 (Ssal_01906) comA 1868631..1870727 (-) 2097 WP_014633613.1 peptide cleavage/export ABC transporter Regulator
  SSAL_RS08685 (Ssal_01907) comR 1870902..1871801 (-) 900 WP_045001949.1 helix-turn-helix transcriptional regulator Regulator
  SSAL_RS08690 (Ssal_01908) - 1871982..1872632 (-) 651 WP_045001950.1 phosphatase PAP2 family protein -
  SSAL_RS08695 (Ssal_01909) - 1872635..1873192 (-) 558 WP_013990037.1 ECF transporter S component -
  SSAL_RS08700 (Ssal_01910) - 1873501..1874010 (-) 510 WP_013990036.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  SSAL_RS08705 (Ssal_01911) trkA 1874288..1875637 (+) 1350 WP_013990035.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35181.70 Da        Isoelectric Point: 5.8538

>NTDB_id=49426 SSAL_RS08685 WP_045001949.1 1870902..1871801(-) (comR) [Streptococcus salivarius 57.I]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMSDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTNWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQFDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKKAAENYDKAIMFASVLEDSVLEESIRAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=49426 SSAL_RS08685 WP_045001949.1 1870902..1871801(-) (comR) [Streptococcus salivarius 57.I]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGTCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTAACTGTGCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCACTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGTCTGATCTATTGGATCATGACAATATTACCATTCCTGACGAATATTATGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAAGT
CTATGAGAAATTCTTTGAACTTCTGCCAGAAGAAGAGTTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
ATTGGGAGGAGAGCCCAAAGGTTGAAGAAATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTCTATGGAAGAAAACAGTTTGACAAAAAACTTTTTGAAAGGAT
TGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTCTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTTTCAGACTTCTTAACAGTTGTGGATAAAGCATTAGCCGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCTAAATATGAACTTCTGCATAAGGGAAATAAGAAAAAGGC
TGCAGAGAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAAGAAAGTATAAGAGCAGGGA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

97.659

100

0.977
  comR Streptococcus salivarius SK126

97.659

100

0.977
  comR Streptococcus thermophilus LMG 18311

93.645

100

0.936
  comR Streptococcus thermophilus LMD-9

92.977

100

0.93
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421

Multiple sequence alignment